Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02709 ATGAACTCACAAGATGCCAAGTGGAAGCTGGATCAGACCCACAAACCCTTACTTCCAAGAGTATTACCGAGTCTGGCATGTGCTTACACAAGTTTCTTACAATGGCTTCCAATGTCTTCTTCACTTCAAGTGATCGCTCTAGGCATCTTAAGTGTAATGTTTGAAAGGCTCTCAAAAGATGGAAGACAGTTTGAGGTTGAAACCAGGGATCATATCAAAAGGTACGCCGAGGCTGGTTTAAGAACCCTTGTAGTCACATACCGTGAACTTGATGAAGAAGAGTATAAGTTATGGGATAAGGAGTTTTCAAAGGTCAAAACTTCTGTAACAGAAGACCGAGATGCACTTGTGGATGCAGCTTCTGACAAGATGGAAAGAGATTTGATACTTCTCGGTGCTACTGCAGTTGAGGATAGACTGCAAAAGGGGGTTCCTGAGTGTATTGAAAAGCTTGCACGGGCAAAAATCAAGTTATGGGTATTGACTGGAGACAAGATGGAAACTGCTGTCAACATAGGGTATGCTTGCAGTTTACTTAGAAAGGACATGAAAAAGATAGTGATCACTCTTGATTCCTCAGATATCCTATACTTGGAAAAACAAGGGGACAAACAGGCTCTAGCAAAGGCTTCTCTTGAAAGCATTAAGAAGCAAATTGGAGAAGGAATCTCACAAATCAACTCTGCAAAGGAGAGTTCTAATGCAAATAAAGGAAGTTCTTCTGGGTTTGGCTTGATAATCGATGGGAAGTCCTTGGATTATTCTCTTAGCAAGAATTTGGAAAGGTCCTTCTTTGAGCTTGCCATTAGTTGTGCTTCTGTCATATGTTGTCGATCTTCACCCAAACAGAAAGCTCGTGTTACAAGGTTGGTAAAATTGGGAACGGGGAAGACAACATTGTCCATTGGTGATAGGGCAAATGATGTTGGCATGCTTCAGGAGGCCGATATTGGAGTTGGTATTAGTGGTGCGGAAGGGATGCAGGCTGTAATGGCAAGTGATTTTGCTATAGCTCAATTCCGGTTTCTGGAACGTCTTTTGTTGGTACATGGGCATTGGTGTTATCGCCGTATATCAATGATGATATGCTATTTTTTCTATAAAAACATTGCATTTGGATTTACCCTTTTTTGGTTTGAGGCATATGCTTCTTTCTCTGGTCAAGCTGCTTACAATGATTGGTAA 1185 0.4143 MNSQDAKWKLDQTHKPLLPRVLPSLACAYTSFLQWLPMSSSLQVIALGILSVMFERLSKDGRQFEVETRDHIKRYAEAGLRTLVVTYRELDEEEYKLWDKEFSKVKTSVTEDRDALVDAASDKMERDLILLGATAVEDRLQKGVPECIEKLARAKIKLWVLTGDKMETAVNIGYACSLLRKDMKKIVITLDSSDILYLEKQGDKQALAKASLESIKKQIGEGISQINSAKESSNANKGSSSGFGLIIDGKSLDYSLSKNLERSFFELAISCASVICCRSSPKQKARVTRLVKLGTGKTTLSIGDRANDVGMLQEADIGVGISGAEGMQAVMASDFAIAQFRFLERLLLVHGHWCYRRISMMICYFFYKNIAFGFTLFWFEAYASFSGQAAYNDW 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02709 394 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 48 394 - -
Viun4g02709 394 FunFam Phospholipid-transporting ATPase 130 342 - -
Viun4g02709 394 SUPERFAMILY HAD-like 124 350 IPR036412 -
Viun4g02709 394 Gene3D - 127 342 IPR023214 -
Viun4g02709 394 NCBIfam phospholipid-translocating P-type ATPase 41 394 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Viun4g02709 394 SUPERFAMILY Calcium ATPase, transmembrane domain M 351 386 IPR023298 -
Viun4g02709 394 Pfam Phospholipid-translocating P-type ATPase C-terminal 330 394 IPR032630 -
Viun4g02709 394 NCBIfam HAD-IC family P-type ATPase 269 385 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02709 Viun-Chr4 41585493 41593886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02709 42 394 Primary Pumps ATPases AT3G27870 74.788 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02709 K01530 - gmx:100817020 636.336