Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02679 ATGGGAGGTCTCGAAGATATCAAAAAAGAGACAGTGGATCTGGAACGGATTCCTGTCGATGAAGTCTTCCGCGAACTGAATTGTACGAAGGAAGGCCTCACCAATGAGGAAGGCGAAAAGAGGTTGCAAGTTTTTGGACCAAACAAGTTGGAAGAAAAGGAGGAAAGCAAAATCCTTAAGTTCTTGGGGTTTATGTGGAACCCTCTCTCATGGGTGATGGAAGCCGCAGCCATCATGGCCATTGGATTGGCAAACGGAGGGGGTGAGCCCCCGGATTGGGAAGACTTTGTCGGAATCGTGGTGTTGCTGGTTATCAACTCCACCATCAGTTTCATCGAAGAAAACAATGCCGGCAACGCCGCCGCCGCACTCATGGCAGGCCTTGCTCCCAAAGCCAAGGTTCTGAGAGACGGGAAATGGTCTGAAGTGGAGGCTTGCATTCTGGTACCGGGAGATATAATCAGCGTCAAACTGGGAGACATCATCCCCGCCGATGCTCGTCTCTTGGAAGGTGATTCCCTCAAGATTGATCAATCTGCACTCACCGGTGAGTCATTGCCTGTTACCAGGAGCCCCGGCGATGAAGTCTTCTCCGGGTCGACGGTGAAGCAGGGAGAGATTGAAGCAGTTGTGATCGCCACCGGGGTTCATACCTTCTTCGGTAAGGCTGCACACCTGGTCGACAGCACCAACCAAGTCGGGCATTTCCAGAAGGTGTTGACGGCGATTGGAAATTTCTGCATCTGCTCCATTGCTGTGGGGATGATCATTGAAATTGTGGTGATGTATCCAATCCAGCACCGCAAGTACAGGAGTGGAATCAACAACCTTTTGGTCCTTCTCATCGGAGGGATTCCCATTGCCATGCCTACAGTGTTGTCAGTAACAATGGCGATCGGTTCCCACAGGCTCTCCGAGCAAGGTGCCATCACCAAGAGGATGACGGCCATTGAGGAGATGGCTGGGATGGATGTTCTGTGCAGTGACAAGACCGGCACTCTCACACTCAACAAGCTTACAGTGGACAAGTCTTTGATTGAGGTTTTCTCACGTGATGCCGACAAGGATACGGTGATTTTGCTTGGAGCTAGAGCCTCCAGAATTGAAAACCAGGATGCTATTGATACTTGCATAGTTGGAATGTTGGGTGATCCAAAAGAGGCGAGAGATGGCATCACAGAGGTGCATTTTCTGCCCTTTAACCCAGTGGACAAGCGCACAGCCATAACATACATTGACAGTGAAGGTAAGTGGTGCAGAGTGAGCAAAGGTGCACCGGAACAGATTATCGAGCTCTGCAACCTTCGGGAAGACGTGAAGAAGAAGGCTTTGGGGATCATCGGTAAATTCGCCGATCGCGGTCTTCGCTCGCTTGCTGTTTCGTGGGTCTCTGACGGCTTTGCCGGTGTCTTCCCCGAGCACAAGTACGAGATTGTGAAGAGACTCCAGGACAGGAAACACATTTGTGGGATGACAGGAGATGGCGTGAACGATGCTCCTGCACTCAAAAAAGCAGATATTGGTATCGCTGTTGCTGATGCAACCGACGCAGCTCGAAGTGCATCCGACATAGTTCTCACCGAGCCTGGTTTGAGTGTGATCGTGAGTGCTGTGTTGACAAGCAGAGCCATCTTCCAAAGGATGAAGAACTACACCATATATGCTGTTTCCATCACCATCAGAGTGGTGTTAGGCTTCTTGCTGCTTGCTCTCATCTGGAAGTTTGACTTCTCACCCTTCATGGTTTTGATCATTGCCATTCTCAACGATGGCACCATCATGACCATTTCCAAGGACAGGGTCCAGCCATCTCCACTTCCAGATTCATGGAAGTTGAGAGAGATTTTCATCACCGGCATTGTTCTCGGTGCCTACCTAGCTGTCATGACTGTTGTATTCTTCTGGGCTGCATATTCATCTGACTTTTTCACAGAAAAATTCGGAGTGAGATCCATCAGGGAAAACCACGGCGAGCTCACGGCGGCTATTTATCTTCAGGTGAGCATTGTGAGTCAGGCACTCATTTTTGTGACACGGTCGAGGAGCTGGTCTTACGTTGAACGCCCCGGTGTGCTTCTTGTCGTTGCTTTTATTATAGCGCAGCTCATTGCGACGGTCATAGCAGTGTATGCAGACTGGGAATTTGCGAAGATTAAAGGCATTGGATGGGGTTGGGCTGGTGTGATTTGGCTCTACAGCATCATCACCTATATTCCAATGGATATTCTCAAGTTCATCATCCGATACAGTTTAACCGGAAAGGCTTGGAACAATATCACTGAGAATAGGGTTGCTTTCACCTCAAAGAACGATTATGGAAAGGGAGAAAGAGAAGCGCAGTGGGCTGCAGCTCAACGTACATTGCATGGCTTGAATCCACCTCAAGCTGTTCATGATATGTTGAATGAGAGAAACAACTACAGGGAGCTGTCTGAGCTTGCAGAACAGGCCAAGAAGCGTGCCGAAGTTGCCAGGCTCAGGGAGCTTCACACCCTCAAGGGTCATGTTGAGTCTGTTGTGAAGCTCAAAGGCCTTGACATCGAGGCAATCCAGCAGCACTACACACTATGA 2571 0.4971 MGGLEDIKKETVDLERIPVDEVFRELNCTKEGLTNEEGEKRLQVFGPNKLEEKEESKILKFLGFMWNPLSWVMEAAAIMAIGLANGGGEPPDWEDFVGIVVLLVINSTISFIEENNAGNAAAALMAGLAPKAKVLRDGKWSEVEACILVPGDIISVKLGDIIPADARLLEGDSLKIDQSALTGESLPVTRSPGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIEIVVMYPIQHRKYRSGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFSRDADKDTVILLGARASRIENQDAIDTCIVGMLGDPKEARDGITEVHFLPFNPVDKRTAITYIDSEGKWCRVSKGAPEQIIELCNLREDVKKKALGIIGKFADRGLRSLAVSWVSDGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRVVLGFLLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVQPSPLPDSWKLREIFITGIVLGAYLAVMTVVFFWAAYSSDFFTEKFGVRSIRENHGELTAAIYLQVSIVSQALIFVTRSRSWSYVERPGVLLVVAFIIAQLIATVIAVYADWEFAKIKGIGWGWAGVIWLYSIITYIPMDILKFIIRYSLTGKAWNNITENRVAFTSKNDYGKGEREAQWAAAQRTLHGLNPPQAVHDMLNERNNYRELSELAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIEAIQQHYTL 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02679 856 Gene3D - 530 719 - -
Viun4g02679 856 Coils Coil 800 827 - -
Viun4g02679 856 Gene3D - 339 461 IPR023299 GO:0000166
Viun4g02679 856 PRINTS P-type cation-transporting ATPase superfamily signature 327 341 - -
Viun4g02679 856 PRINTS P-type cation-transporting ATPase superfamily signature 177 191 - -
Viun4g02679 856 PRINTS P-type cation-transporting ATPase superfamily signature 492 511 - -
Viun4g02679 856 PRINTS P-type cation-transporting ATPase superfamily signature 515 527 - -
Viun4g02679 856 SUPERFAMILY HAD-like 325 585 IPR036412 -
Viun4g02679 856 Gene3D - 464 529 IPR023214 -
Viun4g02679 856 Gene3D - 324 338 IPR023214 -
Viun4g02679 856 PANTHER CALCIUM-TRANSPORTING ATPASE 15 461 - -
Viun4g02679 856 ProSitePatterns E1-E2 ATPases phosphorylation site. 329 335 IPR018303 -
Viun4g02679 856 NCBIfam HAD-IC family P-type ATPase 467 578 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun4g02679 856 NCBIfam HAD-IC family P-type ATPase 99 356 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun4g02679 856 SMART Cation_ATPase_N_a_2 13 85 IPR004014 -
Viun4g02679 856 Gene3D - 130 214 - -
Viun4g02679 856 Gene3D - 92 323 - -
Viun4g02679 856 Pfam Cation transporter/ATPase, N-terminus 17 79 IPR004014 -
Viun4g02679 856 Pfam Cation transport ATPase (P-type) 380 434 - -
Viun4g02679 856 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 750 IPR023298 -
Viun4g02679 856 Pfam haloacid dehalogenase-like hydrolase 464 506 - -
Viun4g02679 856 FunFam Plasma membrane ATPase 130 214 - -
Viun4g02679 856 SUPERFAMILY Calcium ATPase, transduction domain A 130 227 IPR008250 -
Viun4g02679 856 Gene3D - 805 856 - -
Viun4g02679 856 Pfam E1-E2 ATPase 129 306 - -
Viun4g02679 856 FunFam Plasma membrane ATPase 439 540 - -
Viun4g02679 856 CDD P-type_ATPase_H 32 745 IPR006534 GO:0008553|GO:0016020|GO:0120029
Viun4g02679 856 FunFam Plasma membrane ATPase 339 491 - -
Viun4g02679 856 FunFam ATPase 4 plasma membrane-type 477 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02679 Viun-Chr4 41322681 41325562 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02679 4 774 Primary Pumps ATPases AT4G11730 62.835 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02679 K01535 - ath:AT4G11730 910.598