Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02621 ATGATCATGGAGCTACCCGATTCCACCGGCGGCGACCGCAACCTTAACGCGCCGCCGCCGCCGCCGCCCCAGCACAACAACCACCACCAGGACGCTCGCGCAGGCCTCGGAATCGACCTGAACGAGATCCCTTCGCCTTCCTCCTTGTTCGCCGAAACCCTACCGGACTCCGTCACCGACGTCGTCCGCACATATCACGAGAACCCCGGGCCGCCGCCGGGAGGCCCCGCTGCTCTCCCCAGTGGAGGCCTCGCTCCTTGCGCTGCCTGCTCCAAGCCCTGCCCCGCCGCCGCCGGGAGCCACCACCACCTCGTCGTGTGCGACGGCTGCGAGCGTGGCTTCCACCTCGCCTGCGCCGGAATTCGCGGCGGAGGGCGCCAGGCCGCGAGCCTCGAGGAGTGGGTCTGTGGCGAGTGCGTCGCCTCTGGAGTGAAGAGCAAGCGCTGGCCGTTGGGAGTGAAGCAGCTTCTTGATATCAACGCTCCGCCACCGAGCGAAGCCGAAGGCGAAGGCGTCGGCGACGGAGACGCGCAGGATTTGAGTCCATTTGGTGCCCCTCTGACGTATTCAAACTTTTACAATGGAAATGCTACTGGCTTCCAAAAGGCTTCTGGAGGTTTGACACATGCTGATATATTGAATCATACTCAATCAATTACTAGAAAATTTGAGGAGGCTCTTAGAGATTTTATATCTGAAAGACGCGGTGTACTAGAGGAGGGTTGGCGAGTGGAATTTAGACAATCAGTGAGCAGCTCTGAACTATATGCAGTTTACTGTGCACCCGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATTTGGGTCTAATGTCTGGCTTCAATACCGTTGAATCTGAAATAAGAAATGAGAGGTCTCTTGTGTCTTTAAGTGGTTCTCTATCTAGGAAAAAAAAGTCAACAAGATCTCCAGTAGTCAATGGTTTTGTGGAAAAACGGGGAACAATGATGAATAGTAATTGTAAGGATCCTTCTTCTGAAGGTTTAAATGTGGAATGTGCTAGTACTAGGGGGAATGTTGTAAAACCCTATGAAAGTGGAAGAAAAGAGGATGGACACTCCTTCCCTCAGCAATTTGAGGATGAACTCCCTCTACAGTTCAAGGACTTCTTTGTTCTCTCATTGGGGAAAGTTGATGTGAGACCATCGTATTATGATGTCAATCTTATTTGTCCTGTAGGTTATAAATCTTGTTGGCATGACAAGATTACTGGTTCTCTTTTTACATGTGAAATTTTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCCGAAGGTGTTCCTGTTCAGAATTTCCTGTTCCAGTTGGGTCAACCATCCTTTCATTGTCAAAATGTTGTCAAATTGCAAGTCAAGCCAATGAAGGCGAGGGAAAAACTAATGGTAGTATGGATTTGGATGATGGTGATAATATCCAGATGATGCTTCAAGACCCTTGTGTACCAACTGAAAATGATGTCCTAAGTTGCTCTGCAAACTTCTCAATTAAGGATACTCATACACCAGATGCATTGGGCCCTGCGACTGGTTCAGTTCAAGATAATGCTATGAATTCTTTAGCTGATGAGTTTAATGATGGAATTGGTGAATTTTGTGTGGAAGAGCGGTCATCATGCTCTGCATGGAGAGTTATTTCTCAGAAGTTAGTTAATTCTTGCAAGGATTTCTACAAACAGAAAGGAACTCTCAAGTTCTATTGTAACCATGTTAAGAATGAAACATGCTTAAATCAATGGGATTTAGGGAATGTAAAAAGTGATGCATTGGATAAATTTTGTGGTTCCCTCGGTTCAGTTGGCATCCCAGATGTAATTTATGCAGACAGTGATCTGGAAGGTATCTCTGAGGCTTTGAGAAAATGGTTGGAGCAGGATAGGTTTGGATTGGATGTTGAATTTGTTCAAGAAGTATTAGAACAGCTTCCTGGTGTTGAATCTCTGCAGTATGAACTCTTAAATTGTAGAGATAACAGCTCGTCATTGCCAACAGTAGAAAATGGTTTCTTAGTGGTTGAATGGAGAGATGGGTCAAAATATAAGGAAGAAACAGTTCAAGGTTTATACAGGAGGTCTAAAAAGGCAAGTTTGACTAAAAAAGGCTTTAAGGAAGGTCGTCGTCCACCACTTGGGAAGCCATTATGCTCTAGAGCACCGGGTGAGCTCATTGGTGACATTTTTCAGGCTTGGGAACTTTTAGAGCGATTTAACGAAGTTCTGGACTTGAAAGAACCATTGCCATTGGATGAGCTTGAGAAAGAACTAATTAACCCTTGGTTTGATGGATTGGATTTTCTTGAGAAATCTGAGAGGGACGTGGACGAAAGTGAAGTTTTAATTTCCCAAGGAACTGATGGTAATTGCACATCATTATTGTCACCAGGAGGTGATACTGGTCCATCAGGTTCCATGGAAAGTTCTCATGCATTTATTCAAATGGAAACTGAAGCAATGAAAGAGGCTGCTCAAGTTAAGCTCGCATCTTTCACTTACGCCAGATGCTTTGGTGTAACTTTGACCAAGGCTCATAATTCACTGCTGAGAGTGCTAATAGGTGAATTGCTATCAAAGGTGGCTGTGCTGGTGGATCCAAATTCTGAACCTGGAGAAACACGAACAAGACGGGGAAGAAAGAAAGATATGGATAGTGGTCTTCCTGCTAAACGAACCAAACTGAATATGCTTCCTATTAATGAATTGACCTGGCCAGAATTAGCTCGCAGATATATCTTGTCTTTTTTAACAATGGACGGCAACCTTGAGTCTGCAGAAATTACTGCCCGGGAAAGTGGTAAAGTATTTCGCTGCTTACGAGGTGATGGTGGTTTGCTGTGTGGCTCTCTTACTGGTGTGGCTGGAATGGAAGCAGATGCACAGCTGCTTGCAGAGGCTACAAAGAAAATTTTTGGTTCTTTGAGCAGAGAAAGTGATGTACTAACTATGGAAGAAGAAGAGTCTGATGCAAAGGGTGCTTCTGACAAAAATTTGACAAATGATGGTAATGTTCCTGAATGGGCTCAAATGCTAGAACCTGTCAGAAAGCTACCAACAAATGTAGGCACTCGAATAAGAAAGTGTGTTTATGATGCTCTGGGTAAGGATCCACCAGAATGGGCAAAGAAAAAATTGGAACATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGGCTGATGTTGCTGGTGAAGGACTGCAATCAAATCCCAGTAAAGGACAGAAAAGGAAGATTGTTATATCAATTTCTGACATTATAATGAAACGATGTCGCACTGTATTACGGCGTGCTGCTGCTGCAGATGATTCAAAGGTCTTTTGCAATTTGCTGGGAAGAAAATTGATAAATTCTTCAGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCCATGGTGGCTCGCCCTCTTGACTTCCGCACTATTGACCTTAGACTAGCTGCTGGAGCTTATTGTGGATCTCATGAAGCTTTTCTTGAGGATGTTCGGGAGCTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTACTCGAATTGGCTGAAAAATTATCCCAAAACTTTGAATCATTATACAATGAGGAGGTTGTCATGAATGTCCAAAAACTTATGGAGTATGCTAAACTGGAATGCTTAACTGCAGAAATGAGAAAGGAAGTTGATGATTTTATTGAGTCAATGAAAGAGACTCCAAAGGCCCCTTGGGACGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGATAGTGTTTTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTAAACCCTCCCCTCGCAAGGATCCCAGAGGGAAACTGGTATTGTCCTTCCTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACCAACACAGGTTATTGGCAAACGCCGAAGTAAAAAATTCCAGGGTGAAGTTAATTCTCTTTACTTGGAATCCCTTACTCATTTATCAGCTGTAATTGAAGAAAAAGAATACTGGGAGCACAGCCTGGCCGAGAGAACATTCCTTCTCAAATTTTTATGTGATGAGTTGCTTAACTCTTCCTTGATACGCCAGCACCTTGAGCAATGTGCAGAGTTGTCTGCTGAGTTACATCAAAAATTGCGTGCACATTCTGTAGAGTGGAAAAACCTGAAAACCAGAGAGGACGTTTTGTCCACAAAAGCAGCTAAAATTGATACTTCCTCATTAAATACTGCTGGAGAAGTTGGTCTTAGAGAAGGGGTTACTACTTCGTTGTCAAATACTACTAAATGTCTGGTCCAGCCACATACTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGAGACAACTAAAGAGAAGTATAGGTTTGATAGTGTAGATAAAAGCATATCTGTAACAAACTCAGATTCCGATAGCCAAAATTTGAATTCCTTAGATGTAGAGGGACAATTTAGAAATGTCTCTGGTGCTGTGGAGTCTCAATGTACTGATAAATCTCCCAAATCTTTTCCATCTCCAAATATGTCTCAAGAAATCAATGGTTCTGTTGGAGCAGCTCATGCCCATGGTAACCACCAGAAATGCGAGGGAAGGGACATGTCTACACCTGTGACATGCCAGCAAGGTGGGGTGTCAGTTGATGCTTCACATATGGCTTTGAATGAGTCAGACCCCTATCACCTTGAGCTCAGTGCCATCAAGCGTGATATTTCACTATTGCAGGACTCCATAACTAATGTAGTATCACAGCTGCTGAGGCTCTCTGTTCGCCGGGAATTTTTGGGCATTGATTCCATCGGTCGATTGTATTGGGCTTCAACTTTGCCTGGAGGACATTCACGTATAGTTGTTGATGCAAGTGCTGCACTGCTCCATGGAAAAGGAATGTCATTCAGTAGAGACTACGTGGACAAGTTTTCTGTTCTGCAGAATTGTTCACTAACTGAGAAGGATTCCCCTCCTTTCATGTCTCAGCTTAGAAATGCTTTGGCCAATAGTTCACCATGGATTGCTTATGAAACTGATGCTGAAATTGAAGAGCTCTTAGGTTGGCTGGACGATAATGACCCTAAAGAAAGGGAACTGAAAGATTCCATTATGCAGGGGCCAAGATCAAGATTCCAAGAGTTTCTTAATGCACAGACTGAAGAGCAGGTTGAGGACCAAGGAGCTGTTTCAATTCCCAGAAATAGAGAGAAAACAATATCTAACTCTCTTGTTACAAAGGCGACTTCCTTGCTGGAAAAGAAATACGGTCCCTTCTTTGAATGGGATATTGAGACGTGGAAGAAGCAAAATAAAAAGTCCAGAACAACTAATGATGAAAAGTTGTTTAGGTGTGAGTGCCTAGAACCCATATGGCCCTATAGGAGACACTGCACATATTGTCACAAAACTGTTTTGAGTGATGTTGAATTTGATGGACACAATGATGGCAAGTGTAATGCAGGTCTTCCGGTTGCAGAGAAGAATAGGAACAAAATTGGATCTTCTAAAGGAAAAGGGAACTTAAGATGCGATACCTCAAGAGAGAAATTCAGAGCTGATGCAGAAACAGCTGGAGCCAAAGTTGGTGGTGGTTCTAAGCTTAGCTCAAGATTGATTAAATTTTCAAATGAAGAGTCCACATGCCCATTTAGTTTTGAAGATATATGTTCCAAGTTTGAGACAAGTGATTCCAACAAGGAACTTGTCAAAGAAATCGGTCTTATTGGTTCAGATGGTATCCCATCCTTTGTTCCTTCTGTATCTTCTTTTGTTAGCGAGTATGCACAATTCCCAACTCCAAAGGATGACATTATTGGTGTTTTGTCCAAACCAACGGAAAGCTGGGGTTCTCAGGGAAACACTGATGGAGCTGGTGCATGTCTTGACCATAATTCAAGCATTTCTACCGGTAGGTTAGCTGCCAACGAAATCAATAAATCCATTAAATCATCCTCGGGAGAACAAAGAGATGGGAAATTCTCTTTTTGTGGTCCTGCTTCAGATATGGGAGATGGCTGCTGTGTGGTTCCTTTGTCGTCACTGAAACCATTAGTTGGAAAGGTTTCTCACATTTTGAGGCAACTGAAGATTAATCTGCTTGATATGGATGCTGCACTCCCGGCATTTGCTCTGAGACCATCAAAGGCGGAGTCTGACAGAAGACAGGCTTGGCGTGCATTTGTGAAATCTGCAGAGACTATATACGAGATGATTCAGGCGACGTTTACCTTAGAAGATATGATTAAGACGGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCGAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCTCTTGATTTAGCCATTATATACGAGAAAACGCCCAATTCTAGTTTTACTGACAGCTCTGAACCTTCTGGCACAGCAGAGATGAGACCACCGATGAATGTGGATGCAGAGAAATCCAAAGGAAGCCGGAAGTCAAACAGGAAAAGGAAGGAATCAGATGGTTGA 6561 0.435 MIMELPDSTGGDRNLNAPPPPPPQHNNHHQDARAGLGIDLNEIPSPSSLFAETLPDSVTDVVRTYHENPGPPPGGPAALPSGGLAPCAACSKPCPAAAGSHHHLVVCDGCERGFHLACAGIRGGGRQAASLEEWVCGECVASGVKSKRWPLGVKQLLDINAPPPSEAEGEGVGDGDAQDLSPFGAPLTYSNFYNGNATGFQKASGGLTHADILNHTQSITRKFEEALRDFISERRGVLEEGWRVEFRQSVSSSELYAVYCAPDGKIFDSVYEVACYLGLMSGFNTVESEIRNERSLVSLSGSLSRKKKSTRSPVVNGFVEKRGTMMNSNCKDPSSEGLNVECASTRGNVVKPYESGRKEDGHSFPQQFEDELPLQFKDFFVLSLGKVDVRPSYYDVNLICPVGYKSCWHDKITGSLFTCEILEGGDSGPIFRIRRCSCSEFPVPVGSTILSLSKCCQIASQANEGEGKTNGSMDLDDGDNIQMMLQDPCVPTENDVLSCSANFSIKDTHTPDALGPATGSVQDNAMNSLADEFNDGIGEFCVEERSSCSAWRVISQKLVNSCKDFYKQKGTLKFYCNHVKNETCLNQWDLGNVKSDALDKFCGSLGSVGIPDVIYADSDLEGISEALRKWLEQDRFGLDVEFVQEVLEQLPGVESLQYELLNCRDNSSSLPTVENGFLVVEWRDGSKYKEETVQGLYRRSKKASLTKKGFKEGRRPPLGKPLCSRAPGELIGDIFQAWELLERFNEVLDLKEPLPLDELEKELINPWFDGLDFLEKSERDVDESEVLISQGTDGNCTSLLSPGGDTGPSGSMESSHAFIQMETEAMKEAAQVKLASFTYARCFGVTLTKAHNSLLRVLIGELLSKVAVLVDPNSEPGETRTRRGRKKDMDSGLPAKRTKLNMLPINELTWPELARRYILSFLTMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADAQLLAEATKKIFGSLSRESDVLTMEEEESDAKGASDKNLTNDGNVPEWAQMLEPVRKLPTNVGTRIRKCVYDALGKDPPEWAKKKLEHSISKEVYKGNASGPTKKAVLSVLADVAGEGLQSNPSKGQKRKIVISISDIIMKRCRTVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLAAGAYCGSHEAFLEDVRELWNNVRVAFGDQPDLLELAEKLSQNFESLYNEEVVMNVQKLMEYAKLECLTAEMRKEVDDFIESMKETPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTEPTQVIGKRRSKKFQGEVNSLYLESLTHLSAVIEEKEYWEHSLAERTFLLKFLCDELLNSSLIRQHLEQCAELSAELHQKLRAHSVEWKNLKTREDVLSTKAAKIDTSSLNTAGEVGLREGVTTSLSNTTKCLVQPHTAVDNPSNFGVFVDSLPSEETTKEKYRFDSVDKSISVTNSDSDSQNLNSLDVEGQFRNVSGAVESQCTDKSPKSFPSPNMSQEINGSVGAAHAHGNHQKCEGRDMSTPVTCQQGGVSVDASHMALNESDPYHLELSAIKRDISLLQDSITNVVSQLLRLSVRREFLGIDSIGRLYWASTLPGGHSRIVVDASAALLHGKGMSFSRDYVDKFSVLQNCSLTEKDSPPFMSQLRNALANSSPWIAYETDAEIEELLGWLDDNDPKERELKDSIMQGPRSRFQEFLNAQTEEQVEDQGAVSIPRNREKTISNSLVTKATSLLEKKYGPFFEWDIETWKKQNKKSRTTNDEKLFRCECLEPIWPYRRHCTYCHKTVLSDVEFDGHNDGKCNAGLPVAEKNRNKIGSSKGKGNLRCDTSREKFRADAETAGAKVGGGSKLSSRLIKFSNEESTCPFSFEDICSKFETSDSNKELVKEIGLIGSDGIPSFVPSVSSFVSEYAQFPTPKDDIIGVLSKPTESWGSQGNTDGAGACLDHNSSISTGRLAANEINKSIKSSSGEQRDGKFSFCGPASDMGDGCCVVPLSSLKPLVGKVSHILRQLKINLLDMDAALPAFALRPSKAESDRRQAWRAFVKSAETIYEMIQATFTLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDLAIIYEKTPNSSFTDSSEPSGTAEMRPPMNVDAEKSKGSRKSNRKRKESDG 2186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02621 2186 SUPERFAMILY Bromodomain 1093 1213 IPR036427 GO:0005515
Viun4g02621 2186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1243 1326 IPR013083 -
Viun4g02621 2186 MobiDBLite consensus disorder prediction 1 34 - -
Viun4g02621 2186 Gene3D - 372 478 - -
Viun4g02621 2186 PANTHER OS02G0192300 PROTEIN 23 2182 - -
Viun4g02621 2186 MobiDBLite consensus disorder prediction 2144 2186 - -
Viun4g02621 2186 Pfam PHD-finger 1258 1304 IPR019787 -
Viun4g02621 2186 CDD PHD_SF 87 139 - -
Viun4g02621 2186 ProSitePatterns Zinc finger PHD-type signature. 87 139 IPR019786 -
Viun4g02621 2186 ProSitePatterns Zinc finger PHD-type signature. 1259 1303 IPR019786 -
Viun4g02621 2186 MobiDBLite consensus disorder prediction 987 1008 - -
Viun4g02621 2186 MobiDBLite consensus disorder prediction 873 893 - -
Viun4g02621 2186 CDD Bromodomain 1104 1211 - -
Viun4g02621 2186 ProSiteProfiles FYR domain FYRN motif profile. 371 424 IPR003888 GO:0005634
Viun4g02621 2186 ProSiteProfiles Bromodomain profile. 1149 1197 IPR001487 GO:0005515
Viun4g02621 2186 ProSiteProfiles Zinc finger PHD-type profile. 1256 1306 IPR019787 -
Viun4g02621 2186 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1338 1382 IPR028942 -
Viun4g02621 2186 MobiDBLite consensus disorder prediction 2165 2186 - -
Viun4g02621 2186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 145 IPR013083 -
Viun4g02621 2186 Coils Coil 1377 1397 - -
Viun4g02621 2186 Pfam Methyl-CpG binding domain 229 280 IPR001739 GO:0003677
Viun4g02621 2186 Gene3D - 1101 1222 IPR036427 GO:0005515
Viun4g02621 2186 CDD PHD1_Lid2p_like 1258 1303 - -
Viun4g02621 2186 ProSiteProfiles Zinc finger PHD-type profile. 84 142 IPR019787 -
Viun4g02621 2186 SUPERFAMILY FYVE/PHD zinc finger 1247 1308 IPR011011 -
Viun4g02621 2186 SUPERFAMILY FYVE/PHD zinc finger 84 151 IPR011011 -
Viun4g02621 2186 MobiDBLite consensus disorder prediction 2144 2158 - -
Viun4g02621 2186 SMART PHD_3 86 140 IPR001965 -
Viun4g02621 2186 SMART PHD_3 1258 1304 IPR001965 -
Viun4g02621 2186 MobiDBLite consensus disorder prediction 876 893 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02621 Viun-Chr4 40906868 40921585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02621 30 2186 C2H2 Transcription Factor Family AT3G01460 44.826 0.0 1701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun4g02621 MBD 7.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02621 K22768 - gmx:100820223 3422.1