Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02620 ATGATCATGGAGCTACCCGATTCCACCGGCGGCGACCGCAACCTTAACGCGCCGCCGCCGCCGCCGCCCCAGCACAACAACCACCACCAGGACGCTCGCGCAGGCCTCGGAATCGACCTGAACGAGATCCCTTCGCCTTCCTCCTTGTTCGCCGAAACCCTACCGGACTCCGTCACCGACGTCGTCCGCACATATCACGAGAACCCCGGGCCGCCGCCGGGAGGCCCCGCTGCTCTCCCCAGTGGAGGCCTCGCTCCTTGCGCTGCCTGCTCCAAGCCCTGCCCCGCCGCCGCCGGGAGCCACCACCACCTCGTCGTGTGCGACGGCTGCGAGCGTGGCTTCCACCTCGCCTGCGCCGGAATTCGCGGCGGAGGGCGCCAGGCCGCGAGCCTCGAGGAGTGGGTCTGTGGCGAGTGCGTCGCCTCTGGAGTGAAGAGCAAGCGCTGGCCGTTGGGAGTGAAGCAGCTTCTTGATATCAACGCTCCGCCACCGAGCGAAGCCGAAGGCGAAGGCGTCGGCGACGGAGACGCGCAGGATTTGAGAAAGCACACTCTTGGTGACAATTATTTTGGTGCCAGTCCATTTGGTGCCCCTCTGACGTATTCAAACTTTTACAATGGAAATGCTACTGGCTTCCAAAAGGCTTCTGGAGGTTTGACACATGCTGATATATTGAATCATACTCAATCAATTACTAGAAAATTTGAGGAGGCTCTTAGAGATTTTATATCTGAAAGACGCGGTGTACTAGAGGAGGGTTGGCGAGTGGAATTTAGACAATCAGTGAGCAGCTCTGAACTATATGCAGTTTACTGTGCACCCGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATTTGGGTCTAATGTCTGGCTTCAATACCGTTGAATCTGAAATAAGAAATGAGAGGTCTCTTGTGTCTTTAAGTGGTTCTCTATCTAGGAAAAAAAAGTCAACAAGATCTCCAGTAGTCAATGGTTTTGTGGAAAAACGGGGAACAATGATGAATAGTAATTGTAAGGATCCTTCTTCTGAAGGTTTAAATGTGGAATGTGCTAGTACTAGGGGGAATGTTGTAAAACCCTATGAAAGTGGAAGAAAAGAGGATGGACACTCCTTCCCTCAGCAATTTGAGGATGAACTCCCTCTACAGTTCAAGGACTTCTTTGTTCTCTCATTGGGGAAAGTTGATGTGAGACCATCGTATTATGATGTCAATCTTATTTGTCCTGTAGGTTATAAATCTTGTTGGCATGACAAGATTACTGGTTCTCTTTTTACATGTGAAATTTTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCCGAAGGTGTTCCTGTTCAGAATTTCCTGTTCCAGTTGGGTCAACCATCCTTTCATTGTCAAAATGTTGTCAAATTGCAAGTCAAGCCAATGAAGGCGAGGGAAAAACTAATGGTAGTATGGATTTGGATGATGGTGATAATATCCAGATGATGCTTCAAGACCCTTGTGTACCAACTGAAAATGATGTCCTAAGTTGCTCTGCAAACTTCTCAATTAAGGATACTCATACACCAGATGCATTGGGCCCTGCGACTGGTTCAGTTCAAGATAATGCTATGAATTCTTTAGCTGATGAGTTTAATGATGGAATTGGTGAATTTTGTGTGGAAGAGCGGTCATCATGCTCTGCATGGAGAGTTATTTCTCAGAAGTTAGTTAATTCTTGCAAGGATTTCTACAAACAGAAAGGAACTCTCAAGTTCTATTGTAACCATGTTAAGAATGAAACATGCTTAAATCAATGGGATTTAGGGAATGTAAAAAGTGATGCATTGGATAAATTTTGTGGTTCCCTCGGTTCAGTTGGCATCCCAGATGTAATTTATGCAGACAGTGATCTGGAAGGTATCTCTGAGGCTTTGAGAAAATGGTTGGAGCAGGATAGGTTTGGATTGGATGTTGAATTTGTTCAAGAAGTATTAGAACAGCTTCCTGGTGTTGAATCTCTGCAGTATGAACTCTTAAATTGTAGAGATAACAGCTCGTCATTGCCAACAGTAGAAAATGGTTTCTTAGTGGTTGAATGGAGAGATGGGTCAAAATATAAGGAAGAAACAGTTCAAGGTTTATACAGGAGGTCTAAAAAGGCAAGTTTGACTAAAAAAGGCTTTAAGGAAGGTCGTCGTCCACCACTTGGGAAGCCATTATGCTCTAGAGCACCGGGTGAGCTCATTGGTGACATTTTTCAGGCTTGGGAACTTTTAGAGCGATTTAACGAAGTTCTGGACTTGAAAGAACCATTGCCATTGGATGAGCTTGAGAAAGAACTAATTAACCCTTGGTTTGATGGATTGGATTTTCTTGAGAAATCTGAGAGGGACGTGGACGAAAGTGAAGTTTTAATTTCCCAAGGAACTGATGGTAATTGCACATCATTATTGTCACCAGGAGGTGATACTGGTCCATCAGGTTCCATGGAAAGTTCTCATGCATTTATTCAAATGGAAACTGAAGCAATGAAAGAGGCTGCTCAAGTTAAGCTCGCATCTTTCACTTACGCCAGATGCTTTGGTGTAACTTTGACCAAGGCTCATAATTCACTGCTGAGAGTGCTAATAGGTGAATTGCTATCAAAGGTGGCTGTGCTGGTGGATCCAAATTCTGAACCTGGAGAAACACGAACAAGACGGGGAAGAAAGAAAGATATGGATAGTGGTCTTCCTGCTAAACGAACCAAACTGAATATGCTTCCTATTAATGAATTGACCTGGCCAGAATTAGCTCGCAGATATATCTTGTCTTTTTTAACAATGGACGGCAACCTTGAGTCTGCAGAAATTACTGCCCGGGAAAGTGGTAAAGTATTTCGCTGCTTACGAGGTGATGGTGGTTTGCTGTGTGGCTCTCTTACTGGTGTGGCTGGAATGGAAGCAGATGCACAGCTGCTTGCAGAGGCTACAAAGAAAATTTTTGGTTCTTTGAGCAGAGAAAGTGATGTACTAACTATGGAAGAAGAAGAGTCTGATGCAAAGGGTGCTTCTGACAAAAATTTGACAAATGATGGTAATGTTCCTGAATGGGCTCAAATGCTAGAACCTGTCAGAAAGCTACCAACAAATGTAGGCACTCGAATAAGAAAGTGTGTTTATGATGCTCTGGGTAAGGATCCACCAGAATGGGCAAAGAAAAAATTGGAACATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGGCTGATGTTGCTGGTGAAGGACTGCAATCAAATCCCAGTAAAGGACAGAAAAGGAAGATTGTTATATCAATTTCTGACATTATAATGAAACGATGTCGCACTGTATTACGGCGTGCTGCTGCTGCAGATGATTCAAAGGTCTTTTGCAATTTGCTGGGAAGAAAATTGATAAATTCTTCAGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCCATGGTGGCTCGCCCTCTTGACTTCCGCACTATTGACCTTAGACTAGCTGCTGGAGCTTATTGTGGATCTCATGAAGCTTTTCTTGAGGATGTTCGGGAGCTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTACTCGAATTGGCTGAAAAATTATCCCAAAACTTTGAATCATTATACAATGAGGAGGTTGTCATGAATGTCCAAAAACTTATGGAGTATGCTAAACTGGAATGCTTAACTGCAGAAATGAGAAAGGAAGTTGATGATTTTATTGAGTCAATGAAAGAGACTCCAAAGGCCCCTTGGGACGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGATAGTGTTTTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTAAACCCTCCCCTCGCAAGGATCCCAGAGGGAAACTGGTATTGTCCTTCCTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACCAACACAGGTTATTGGCAAACGCCGAAGTAAAAAATTCCAGGGTGAAGTTAATTCTCTTTACTTGGAATCCCTTACTCATTTATCAGCTGTAATTGAAGAAAAAGAATACTGGGAGCACAGCCTGGCCGAGAGAACATTCCTTCTCAAATTTTTATGTGATGAGTTGCTTAACTCTTCCTTGATACGCCAGCACCTTGAGCAATGTGCAGAGTTGTCTGCTGAGTTACATCAAAAATTGCGTGCACATTCTGTAGAGTGGAAAAACCTGAAAACCAGAGAGGACGTTTTGTCCACAAAAGCAGCTAAAATTGATACTTCCTCATTAAATACTGCTGGAGAAGTTGGTCTTAGAGAAGGGGTTACTACTTCGTTGTCAAATACTACTAAATGTCTGGTCCAGCCACATACTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGAGACAACTAAAGAGAAGTATAGGTTTGATAGTGTAGATAAAAGCATATCTGTAACAAACTCAGATTCCGATAGCCAAAATTTGAATTCCTTAGATGTAGAGGGACAATTTAGAAATGTCTCTGGTGCTGTGGAGTCTCAATGTACTGATAAATCTCCCAAATCTTTTCCATCTCCAAATATGTCTCAAGAAATCAATGGTTCTGTTGGAGCAGCTCATGCCCATGGTAACCACCAGAAATGCGAGGGAAGGGACATGTCTACACCTGTGACATGCCAGCAAGGTGGGGTGTCAGTTGATGCTTCACATATGGCTTTGAATGAGTCAGACCCCTATCACCTTGAGCTCAGTGCCATCAAGCGTGATATTTCACTATTGCAGGACTCCATAACTAATGTAGTATCACAGCTGCTGAGGCTCTCTGTTCGCCGGGAATTTTTGGGCATTGATTCCATCGGTCGATTGTATTGGGCTTCAACTTTGCCTGGAGGACATTCACGTATAGTTGTTGATGCAAGTGCTGCACTGCTCCATGGAAAAGGAATGTCATTCAGTAGAGACTACGTGGACAAGTTTTCTGTTCTGCAGAATTGTTCACTAACTGAGAAGGATTCCCCTCCTTTCATGTCTCAGCTTAGAAATGCTTTGGCCAATAGTTCACCATGGATTGCTTATGAAACTGATGCTGAAATTGAAGAGCTCTTAGGTTGGCTGGACGATAATGACCCTAAAGAAAGGGAACTGAAAGATTCCATTATGCAGGGGCCAAGATCAAGATTCCAAGAGTTTCTTAATGCACAGACTGAAGAGCAGGTTGAGGACCAAGGAGCTGTTTCAATTCCCAGAAATAGAGAGAAAACAATATCTAACTCTCTTGTTACAAAGGCGACTTCCTTGCTGGAAAAGAAATACGGTCCCTTCTTTGAATGGGATATTGAGACGTGGAAGAAGCAAAATAAAAAGTCCAGAACAACTAATGATGAAAAGTTGTTTAGGTGTGAGTGCCTAGAACCCATATGGCCCTATAGGAGACACTGCACATATTGTCACAAAACTGTTTTGAGTGATGTTGAATTTGATGGACACAATGATGGCAAGTGTAATGCAGGTCTTCCGGTTGCAGAGAAGAATAGGAACAAAATTGGATCTTCTAAAGGAAAAGGGAACTTAAGATGCGATACCTCAAGAGAGAAATTCAGAGCTGATGCAGAAACAGCTGGAGCCAAAGTTGGTGGTGGTTCTAAGCTTAGCTCAAGATTGATTAAATTTTCAAATGAAGAGTCCACATGCCCATTTAGTTTTGAAGATATATGTTCCAAGTTTGAGACAAGTGATTCCAACAAGGAACTTGTCAAAGAAATCGGTCTTATTGGTTCAGATGGTATCCCATCCTTTGTTCCTTCTGTATCTTCTTTTGTTAGCGAGTATGCACAATTCCCAACTCCAAAGGATGACATTATTGGTGTTTTGTCCAAACCAACGGAAAGCTGGGGTTCTCAGGGAAACACTGATGGAGCTGGTGCATGTCTTGACCATAATTCAAGCATTTCTACCGGTAGGTTAGCTGCCAACGAAATCAATAAATCCATTAAATCATCCTCGGGAGAACAAAGAGATGGGAAATTCTCTTTTTGTGGTCCTGCTTCAGATATGGGAGATGGCTGCTGTGTGGTTCCTTTGTCGTCACTGAAACCATTAGTTGGAAAGGTTTCTCACATTTTGAGGCAACTGAAGATTAATCTGCTTGATATGGATGCTGCACTCCCGGCATTTGCTCTGAGACCATCAAAGGCGGAGTCTGACAGAAGACAGGCTTGGCGTGCATTTGTGAAATCTGCAGAGACTATATACGAGATGATTCAGGCGACGTTTACCTTAGAAGATATGATTAAGACGGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCGAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCTCTTGATTTAGCCATTATATACGAGAAAACGCCCAATTCTAGTTTTACTGACAGCTCTGAACCTTCTGGCACAGCAGAGATGAGACCACCGATGAATGTGGATGCAGAGAAATCCAAAGGAAGCCGGAAGTCAAACAGGAAAAGGAAGGAATCAGATGGTTGA 6597 0.4349 MIMELPDSTGGDRNLNAPPPPPPQHNNHHQDARAGLGIDLNEIPSPSSLFAETLPDSVTDVVRTYHENPGPPPGGPAALPSGGLAPCAACSKPCPAAAGSHHHLVVCDGCERGFHLACAGIRGGGRQAASLEEWVCGECVASGVKSKRWPLGVKQLLDINAPPPSEAEGEGVGDGDAQDLRKHTLGDNYFGASPFGAPLTYSNFYNGNATGFQKASGGLTHADILNHTQSITRKFEEALRDFISERRGVLEEGWRVEFRQSVSSSELYAVYCAPDGKIFDSVYEVACYLGLMSGFNTVESEIRNERSLVSLSGSLSRKKKSTRSPVVNGFVEKRGTMMNSNCKDPSSEGLNVECASTRGNVVKPYESGRKEDGHSFPQQFEDELPLQFKDFFVLSLGKVDVRPSYYDVNLICPVGYKSCWHDKITGSLFTCEILEGGDSGPIFRIRRCSCSEFPVPVGSTILSLSKCCQIASQANEGEGKTNGSMDLDDGDNIQMMLQDPCVPTENDVLSCSANFSIKDTHTPDALGPATGSVQDNAMNSLADEFNDGIGEFCVEERSSCSAWRVISQKLVNSCKDFYKQKGTLKFYCNHVKNETCLNQWDLGNVKSDALDKFCGSLGSVGIPDVIYADSDLEGISEALRKWLEQDRFGLDVEFVQEVLEQLPGVESLQYELLNCRDNSSSLPTVENGFLVVEWRDGSKYKEETVQGLYRRSKKASLTKKGFKEGRRPPLGKPLCSRAPGELIGDIFQAWELLERFNEVLDLKEPLPLDELEKELINPWFDGLDFLEKSERDVDESEVLISQGTDGNCTSLLSPGGDTGPSGSMESSHAFIQMETEAMKEAAQVKLASFTYARCFGVTLTKAHNSLLRVLIGELLSKVAVLVDPNSEPGETRTRRGRKKDMDSGLPAKRTKLNMLPINELTWPELARRYILSFLTMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADAQLLAEATKKIFGSLSRESDVLTMEEEESDAKGASDKNLTNDGNVPEWAQMLEPVRKLPTNVGTRIRKCVYDALGKDPPEWAKKKLEHSISKEVYKGNASGPTKKAVLSVLADVAGEGLQSNPSKGQKRKIVISISDIIMKRCRTVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLAAGAYCGSHEAFLEDVRELWNNVRVAFGDQPDLLELAEKLSQNFESLYNEEVVMNVQKLMEYAKLECLTAEMRKEVDDFIESMKETPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTEPTQVIGKRRSKKFQGEVNSLYLESLTHLSAVIEEKEYWEHSLAERTFLLKFLCDELLNSSLIRQHLEQCAELSAELHQKLRAHSVEWKNLKTREDVLSTKAAKIDTSSLNTAGEVGLREGVTTSLSNTTKCLVQPHTAVDNPSNFGVFVDSLPSEETTKEKYRFDSVDKSISVTNSDSDSQNLNSLDVEGQFRNVSGAVESQCTDKSPKSFPSPNMSQEINGSVGAAHAHGNHQKCEGRDMSTPVTCQQGGVSVDASHMALNESDPYHLELSAIKRDISLLQDSITNVVSQLLRLSVRREFLGIDSIGRLYWASTLPGGHSRIVVDASAALLHGKGMSFSRDYVDKFSVLQNCSLTEKDSPPFMSQLRNALANSSPWIAYETDAEIEELLGWLDDNDPKERELKDSIMQGPRSRFQEFLNAQTEEQVEDQGAVSIPRNREKTISNSLVTKATSLLEKKYGPFFEWDIETWKKQNKKSRTTNDEKLFRCECLEPIWPYRRHCTYCHKTVLSDVEFDGHNDGKCNAGLPVAEKNRNKIGSSKGKGNLRCDTSREKFRADAETAGAKVGGGSKLSSRLIKFSNEESTCPFSFEDICSKFETSDSNKELVKEIGLIGSDGIPSFVPSVSSFVSEYAQFPTPKDDIIGVLSKPTESWGSQGNTDGAGACLDHNSSISTGRLAANEINKSIKSSSGEQRDGKFSFCGPASDMGDGCCVVPLSSLKPLVGKVSHILRQLKINLLDMDAALPAFALRPSKAESDRRQAWRAFVKSAETIYEMIQATFTLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDLAIIYEKTPNSSFTDSSEPSGTAEMRPPMNVDAEKSKGSRKSNRKRKESDG 2198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02620 2198 Pfam Methyl-CpG binding domain 241 292 IPR001739 GO:0003677
Viun4g02620 2198 SUPERFAMILY Bromodomain 1105 1225 IPR036427 GO:0005515
Viun4g02620 2198 MobiDBLite consensus disorder prediction 2177 2198 - -
Viun4g02620 2198 Coils Coil 1389 1409 - -
Viun4g02620 2198 MobiDBLite consensus disorder prediction 1 34 - -
Viun4g02620 2198 CDD PHD1_Lid2p_like 1270 1315 - -
Viun4g02620 2198 Pfam PHD-finger 1270 1316 IPR019787 -
Viun4g02620 2198 CDD PHD_SF 87 139 - -
Viun4g02620 2198 ProSitePatterns Zinc finger PHD-type signature. 87 139 IPR019786 -
Viun4g02620 2198 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1350 1394 IPR028942 -
Viun4g02620 2198 MobiDBLite consensus disorder prediction 2156 2170 - -
Viun4g02620 2198 ProSiteProfiles FYR domain FYRN motif profile. 383 436 IPR003888 GO:0005634
Viun4g02620 2198 SMART PHD_3 86 140 IPR001965 -
Viun4g02620 2198 SMART PHD_3 1270 1316 IPR001965 -
Viun4g02620 2198 Gene3D - 384 490 - -
Viun4g02620 2198 Gene3D - 1113 1234 IPR036427 GO:0005515
Viun4g02620 2198 MobiDBLite consensus disorder prediction 888 905 - -
Viun4g02620 2198 SUPERFAMILY FYVE/PHD zinc finger 1259 1320 IPR011011 -
Viun4g02620 2198 ProSiteProfiles Zinc finger PHD-type profile. 1268 1318 IPR019787 -
Viun4g02620 2198 MobiDBLite consensus disorder prediction 2156 2198 - -
Viun4g02620 2198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 145 IPR013083 -
Viun4g02620 2198 ProSiteProfiles Zinc finger PHD-type profile. 84 142 IPR019787 -
Viun4g02620 2198 SUPERFAMILY FYVE/PHD zinc finger 84 151 IPR011011 -
Viun4g02620 2198 ProSiteProfiles Bromodomain profile. 1161 1209 IPR001487 GO:0005515
Viun4g02620 2198 ProSitePatterns Zinc finger PHD-type signature. 1271 1315 IPR019786 -
Viun4g02620 2198 PANTHER OS02G0192300 PROTEIN 23 2194 - -
Viun4g02620 2198 MobiDBLite consensus disorder prediction 999 1020 - -
Viun4g02620 2198 MobiDBLite consensus disorder prediction 885 905 - -
Viun4g02620 2198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1255 1338 IPR013083 -
Viun4g02620 2198 CDD Bromodomain 1116 1223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02620 Viun-Chr4 40906868 40921585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02620 30 2198 C2H2 Transcription Factor Family AT3G01460 44.920 0.0 1713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun4g02620 MBD 7.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02620 K22768 - gmx:100820223 3448.68