Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02619 ATGTCAGTTATTATAACAGTGGTGCTGATATTTGTGGGATTTGTGGTGCTGATCATATTTCATGTTTGTATTTCGGAGAGACTCTCTAGGAGAGGATCTATGGTTGAGAGGGGTGCAAATGGGGGAAGAAGCATGTCCATGGACGAGTTGGAGAAGCTTCCATGTTATGATTATGTTGCCAAAGGCAACACAAGTAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAGCCTCATCACTGGAGATAAGTGCAGATTGTTACCTATGTGCAAGCACAGTTTTCATGTTCAATGTGTGGACACATGGCTTCTTAAGACACCCTTTTGTCCAATTTGCAGGTCTAATGCTAATTCTCATAGTGGAAACCAAGTTACAGGTAACAGTGACTACTTGGTAGCACCAAATAGTCAGCAACATGACAACATGGTGGTTTTGGTACAGCTGAGAGAAAACCTAGAAAATGTTCAGTCAACAAATGTTGTCATGGAAAATCCAACATTAGGAAGTCATAACTTGGTCAGAGAGGAGTAG 528 0.4205 MSVIITVVLIFVGFVVLIIFHVCISERLSRRGSMVERGANGGRSMSMDELEKLPCYDYVAKGNTSSPVDCAVCLESLITGDKCRLLPMCKHSFHVQCVDTWLLKTPFCPICRSNANSHSGNQVTGNSDYLVAPNSQQHDNMVVLVQLRENLENVQSTNVVMENPTLGSHNLVREE 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02619 175 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 148 - -
Viun4g02619 175 SUPERFAMILY RING/U-box 69 124 - -
Viun4g02619 175 FunFam RING-H2 finger protein ATL2K 45 118 - -
Viun4g02619 175 SMART ring_2 70 111 IPR001841 -
Viun4g02619 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 121 IPR013083 -
Viun4g02619 175 Pfam Ring finger domain 69 112 IPR001841 -
Viun4g02619 175 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02619 Viun-Chr4 40894815 40896114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02619 50 145 C3H Transcription Factor Family AT2G18650 44.330 8.60e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02619 - K15692 gmx:102667575 288.5