Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02606 ATGATGTATCCTAGGTTGTTGGTTTTGGACCATACCCATTTGAAGATGGCATGGGTTAAGCATCAAATCCAGCAGAAAGATGGTTACTTGAGCTACTCACCACCACTTCTCTCTTCATCTTCTTCACCTCCTTACCCTCCCGGTGCTGCTTTCCACAAAGATTCACCACCTTCAACAGCAACAACAGCAACAACAGCATCATCTGGCACTAGAATTAGTCCTGCGGTTCTCTTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATCTCTGGTGTCCTCCACCTGCTTGTTAGATTTCTCATAAAGTACCCATCTTCTTCTGCATCTGCTCAATCCAACAGACACCCAGAAATCTCCACATCTGATGCACTCCAGCGGCAGCTGCAGCAGCTCTTCCATCTCCACGACTCTGGCTTGGATCAAGCTTTCATCGATGCTCTTCCTGTGTTTCAGTACAAGGAGATTGTTGGGCTGAAAGAGCCCTTTGACTGTGCTGTTTGTTTGTGTGAGTTTTCTGAGAAGGATAAGCTGAGGTTGTTGCCTATGTGCAGCCATGCTTTTCACATCAGTTGCATAGACACATGGCTTCTGTCAAACTCCACATGCCCTCTTTGCAGAGGAACGCTTCTCACTCAGGGGTTTTCCATTGAGAACCCTATATTTGATTTTGATGATCTCAGGGAGGATGAAGGGAATGGGGAGAGTGGATTCAGTAGTACCAGACAGAAAACAGTGGTGGCTGAAGAAAGTGTTGAGAAAGGGGTTTTCCCTGTGAGGCTTGGGAAATTCAAGAAGCTGAGTGTGGAGGGTGGGGAGAGAGAAGTGGGAGAGACAAGTAGCAGTAATTTGGATGCAAGAAGGTGCTACTCAATGGGGTCTTACCAATATGTGGTTGGCAATTCAGAACTCAGGGTGGCCTTAAACCATGAAATTGATAAAGGTCAAAACACAAGGCTTCTCACCAAAGGAATGGACCATGATGATGGCAAGTTTTCAGTGGAGGGGGATGTGGAAGCAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGCTTTTCTGTGTCAAAAATCTGGTTGTGGCCAAAGAAGGGGAAATTACCTTCTTCTTTGGATGCTCAAATGGCCATGCCAGTACCATCTTTTCTAAACACAGATTTTCAAAGGAGGAGGGAAACAGAAGGGGTTTGA 1185 0.4549 MMYPRLLVLDHTHLKMAWVKHQIQQKDGYLSYSPPLLSSSSSPPYPPGAAFHKDSPPSTATTATTASSGTRISPAVLFIIVVLAVLFFISGVLHLLVRFLIKYPSSSASAQSNRHPEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTQGFSIENPIFDFDDLREDEGNGESGFSSTRQKTVVAEESVEKGVFPVRLGKFKKLSVEGGEREVGETSSSNLDARRCYSMGSYQYVVGNSELRVALNHEIDKGQNTRLLTKGMDHDDGKFSVEGDVEAKKISSVSKGDSFSVSKIWLWPKKGKLPSSLDAQMAMPVPSFLNTDFQRRRETEGV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02606 394 Pfam Ring finger domain 163 206 IPR001841 -
Viun4g02606 394 CDD RING-H2_EL5-like 163 206 - -
Viun4g02606 394 SMART ring_2 164 205 IPR001841 -
Viun4g02606 394 FunFam RING-H2 finger protein ATL46 126 211 - -
Viun4g02606 394 SUPERFAMILY RING/U-box 143 212 - -
Viun4g02606 394 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Viun4g02606 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 68 357 - -
Viun4g02606 394 MobiDBLite consensus disorder prediction 40 65 - -
Viun4g02606 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 212 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02606 Viun-Chr4 40834253 40838490 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02606 61 364 C3H Transcription Factor Family AT2G18650 41.716 5.32e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02606 - - gmx:100806337 597.816