Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02582 ATGTCGGAAGGGTTCGCGATCGAACTGTACTTGGATCCGGCGTTGGAGAATCAGGTGCTGAAGGCGTGGAACATTCTCGCGCGCCGACAAATCACCACTCACCTCATCGAGATGGAGTCGCGCCCTCACATAACGCTCTTCTCCGCCCCCTTTCTAGAACCTTCCAAGCTCGAATCGCTTCTCAGAACCTTCGCATCCAAGCACGATCCTCTCTTTCTCTCCTTCTCCTCCGTCGGCACCTTCCCCAACCACGCCGACAACCTCCTCTTCCTGGCGCCCACGCCCTCCCTCTCCCTCCTCCAATTCCAGTCCCACCTCTGCGACGCCATCAGAAAAGAAGGTATTGAGATCTCCGACGACTTCGCCTTCAATTCCTGGATACCTTACTGCTCGGTTGCACACCATGTCCCCAAAAACAGAATGCCCGAGGCTTTCTCTCTTTTGCGGGAACTTAAACTGCCGGTTTCTGGTTACGCTACGGACATCGCGCTCGTGCAGTTCTCTCCGGTTCGTGAACTCTTCTCCTCTGTGCTCGGTAATAATGTAGAATCCTGA 555 0.5477 MSEGFAIELYLDPALENQVLKAWNILARRQITTHLIEMESRPHITLFSAPFLEPSKLESLLRTFASKHDPLFLSFSSVGTFPNHADNLLFLAPTPSLSLLQFQSHLCDAIRKEGIEISDDFAFNSWIPYCSVAHHVPKNRMPEAFSLLRELKLPVSGYATDIALVQFSPVRELFSSVLGNNVES 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02582 184 Gene3D Cyclic phosphodiesterase 5 174 - -
Viun4g02582 184 Pfam 2'-5' RNA ligase superfamily 41 166 - -
Viun4g02582 184 PANTHER - 1 182 - -
Viun4g02582 184 SUPERFAMILY LigT-like 5 165 IPR009097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02582 Viun-Chr4 40675275 40676264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02582 1 184 Calmodulin-binding Proteins AT5G40190 61.413 2.99e-78 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02582 - - pvu:PHAVU_004G019100g 354.369