Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02578 ATGCATGGGTGTGGTGGTGACCAGTGGAAACACAATCGGCACATGTGGCCTGTACCTGCTAACGCGACCACTGTAGCCATCGATTCTTCACCGTCTCAATTTATATGCAAAGATGGACGCAAGATTCGCGCCGGTGATTGTGCACTCTTCAAGCCACCTAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGTTATCTTATGATAAACAAGAAAGTCCAAGTTTAGAAGTACATTGGCTTTACCGACCTGCTGATTTAAAACTCGCTAAAGGAATTGTGCTGGAAGCTGCACCGAACGAAGTTTTTTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTCGACGAGTTTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAGGACTACCTTAATGAACAACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAGCATCAACACAGTCTTTGAAATCTGGTTCTGACAATATACAAAATAGTTCTTCGTTTGGTGCACAGGGTAAGGGTAAAAAGAGAGAGCGGGGTGATCAGGGTTCTGATTCATCTAAAAAGGAGCGGTTATTTAAGATAGAAGATGGAGATTCTGGTCAGTTTAGACCGGAGAGCATGTTAAAGTCCGAGATTGCTAAAATAACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAAACTGGTACAGCTTATGCAGCCTGACAGTGCTGATAAAAAGATTGATTTACCTGGGCGGATAATGCTTGTTGATGTAATTGCACTTACAGACCGGTACGACTGTCTGGGCTGGTTTGTACAGCTTAGGGGTTTACCTGTATTGGATGAATGGCTGCAGGAGGTCCATAAGGGAAAAATTGGTGATGGAAATCCCAAAGAAAGTGACAAGTCTGTTGATGATTTTTTGTTAGCTTTACTGCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTGCAGACCTGTAATGTTGGTAAGTCTGTCAATCATTTACGCACGCACAAGAATGCTGAAATTCAGAGGAAAGCCCGGAGTTTAGTGGACACATGGAAGAGGCGTGTGGAAGCTGAAATGAACATGAATGATTCAAAGTCTGGTTCAAACCGTGCTGTTTCTTGGCCAGCAAAGCCAGCAAACTCGGAGTCTCCTCATGTTGGAAATAGGAAAACAGGCGGATCCTCTGATAACGTTGTGAAGAGCTCCGCAATTCAACCCTCATTATCTAAAAGTTCCCAATCTAAGTTAAGTTCTGGAGAAGCTTTGTCGAAGTCTTCATCTCCTGCCTCTACTAAATCATCGACTACCCCAGCAGGCGTGAACTCAAAAGATCAAAACAGTAAATTCTTTGTTGCTGCAACGTCAGATCTACCTCTGACACCTATCAAAGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAATAACAGTATAACTTGTTCTAGTGAACATGCTAAGACTATTGGTTCTTGCAGGGAAGATGCAAAGAGCTCTACTGCAGTGTCAATGAGTGGAAGTAAAATTCATGGTTGTACATCTCGAACTCGCAAGTCAAGCAATGGCGTACATGGGGGGGCTGGTACCGCGGTAGGTCAAAAGGAGCACAACTCTGCAAAACACGCAACCAGAAATTCACCTTCTGAGAAAGTATCACCAACTCGAGCATCCCATGAAAAATCAATTGACCAGGCCCTTGCCGATCAAGGGAATAACCAGCGACTGATTCTTAGGTTGCCAAACACCGGTCGCAGTCCTTCAAGGGGAGCTAGCGGGGGCTCTTTTGAAGAACCAGCTACAACGAGCAGCAAAGCTTCATCTCCTGCTGACCGGAATGATAATCAGGACAGAAGAGTGAAAACTAAGGCCGAGTGTTTACTGACCCATGTGTCAAATATGATGAATGAGGCTTGTGATGCTAATGATGCTTTGATTGGTGATGAAGGTAAGGGTACTCCAATAGTTGATGAGCGAAGCAGGGCAAATGAAGATAGTGATAAGGTATTAGAAACATCAAAGCCAACTAGTTTGCCATCTGGGTTTGTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCGTTAGTTGAAAGCTGTGTAAAGTTTTCTGAAGCAAGTTCATCCGTTTCCCATGGAGACGATGGGATGAACCTACTAGCCACTGTGGCTGCTGGGGAAATATCCAGATCTGAAAATGCGTCACCTGTGGCATCCCCTGAGAGAAAGTCTCCTGCAGCAGATGAAATGTGCTCAGGCAATGATTTGAAGTTAAAGCATTCTGGTGAAGCAGCTGTTCGCACTCTTTCGGAGTTGAATGGTAGGGCTACAGGGGAGCATCCTTTGAATACAGTTGATTCATTGCAGATAAAGAATGAGTTGAGGCATCCTGCCATGACTCTGTCACGTGATTTTTCAGGGGATGGTGAAACCATTTCATCCCATGACACTCATATAAATGTCTCCCCTACAAATTTGTCACAAAATGTTGAAGGTCCATGCTTACGGACCGAAACCAAAGAAGATACTTCTGTTACTATACTGACAGCAAAAAAGGAGAGTAATGCAGACGCTGAAGTTTCAGACTCTAAATTAATGCCAAGGGCCTCCTCCTTGGATGATGATCAGAAGGTTGATCACATGAGTGAGGAGATCATTGAGGATGAGAAAATGTTGGTTTCAAAACCTGTTACAAATGTTGAGTCAGAAAACGTATCTGGTGAAAAGCAGCCGGAGTTAACTTCAGGTGTGGTGGATAATGAGAACCAGATTAGTGTGGAGAAAGCAACAGGTACTGGAATACTAGTGCAAAAGGCCTCTCCAATTGCTGAAAACTGTGAGTCTGCATATTTAAAAAAGGAGTCACCTGCTTCTGGCAATGCTTTAATTGTACCCAAGGATGAAAGTGCCGATGACATGAAGTCAGTTGTGATTGAGCCTGATGTAAGACCTATCGAGCAGGATTCTTCTGCTCCAGATGATTCTAATGAATGTGCTGAAGTTAATATGGGCAGAAAAGAAACCATTGGTCAGTGTTCTGGTTCATCAGTTCAGCCAGATTTACAAGCAATGGCTAGGACAGAGAGTGAAGTGTCCAAATCATGTGAGCAAAAGCTTGATGCAAACCCGTCTGAAGTTTCAGGAGAGAGGCATGCATGCTCTACAGCTGGTGCTGATGCAGCTGTAAAACTTGACTTTGATTTAAATGAAGGCTTTCCTGTTGATGATGTAAGCCAAGGGGAGATTGCCAGACAGGATGATCCTATCACATCATCTGCAGTTCATGTTCCTTGCCCGTTGCCTTTTCCTATTTCGTCCATCTCTGGTGGCTTCCACCCTTCAATTACTGTTGCATCCGCTGCTAAAGGGCCGGTTGTTCCACCAGAAAACCCATTGAGGATCAAGGGGGAGCTTGGATGGAAAGGATCTGCCGCTACCAGTGCATTTCGACCAGCTGAACCTAGGAAAAATACTGAGATGCAGTCCTCTACTAATGATATTACTTCTGTTGATGTCACTTCTATCAAACAAAATCGCCCCCCCTTAGATTTTGACTTGAATGTGGCAGATGAGAGATGTTTTGAAGATGTTGGTTCACATGGTTCTTTAGATTCTGGACCGCATGATCGTAGTGTGGGTCTTGATCTCGATTTAAACAGAGTTGATGAGACTCCTGAAATTGGTACTTTCTCTATAAGCAAACTGGATATTCCTGCTTTACCAAGCAAGCCGTCATTGTCTAGTGGGTTGTCTAATGGTGGAAGTGTCTCAAGAGACTTTGACTTAAATAACGGGCCTGGCCTTGAAGAAGTTGGTAGTGAAGTCCCTATACGTAGTCAGCAGATGAAAAATTCTGTGCCGTTTCCAAGTGCTGTTCATAGCACGAGAACAAACAGTGCTGAATATGGAAATTATTCTGCATGGTTTCCTCCTGGCAATTCCTATTCTGCAATTACTGTCCCGCCACTTCTATCTGGTAGAGGGGAGCAGAGTTATGTTACTGGTGCCGGGGCACAACGAATAATGGGTCCAACAGGTAGCACACCTTTTGGTCCTGAAATCTACAGGGGATCAGTACTTTCATCCTCACCGGCTGTTGCTTATCCGTCCACTACAGCTTTTCCATATCCTGGATTTCCATTTGAAACCAATTTTCCATTATCCTCAAACTCCTTTTCTGGTTCAAATGCATTTATGGATTCGTCGAATGTGGGCGGGCTATGTTTTCCTACCATGCCTACACAGCCAGTGGGGCCTGGTGGTGTCGTTTCATCCACATATCCTCGTCCATATGTCATGAGTCTTCCAGGTGGTACTAGTAATGTGATACCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCAGGCCCTGGTGTAGCAGATACAGAACGGAGGGACGAAAGATTGCCCTCAGGATTGAGGCAAATGTCTGTCCCGAACCCACAACCCTCAATTGAGGACCACTTGAAGATGTTTCAGATGGCAGGGGCTGCTGCATTGAAAAGAAAAGAGCCTGATGGTGGTTGGGATGCTGAAAGATTCGGTTATAAGCAACACTCACGGCAATAG 4728 0.4444 MHGCGGDQWKHNRHMWPVPANATTVAIDSSPSQFICKDGRKIRAGDCALFKPPRDSPPFIGIIRKLSYDKQESPSLEVHWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNEQQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPASTQSLKSGSDNIQNSSSFGAQGKGKKRERGDQGSDSSKKERLFKIEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVEKLVQLMQPDSADKKIDLPGRIMLVDVIALTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNPKESDKSVDDFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNAEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRAVSWPAKPANSESPHVGNRKTGGSSDNVVKSSAIQPSLSKSSQSKLSSGEALSKSSSPASTKSSTTPAGVNSKDQNSKFFVAATSDLPLTPIKEERSSSSSQSQNNSITCSSEHAKTIGSCREDAKSSTAVSMSGSKIHGCTSRTRKSSNGVHGGAGTAVGQKEHNSAKHATRNSPSEKVSPTRASHEKSIDQALADQGNNQRLILRLPNTGRSPSRGASGGSFEEPATTSSKASSPADRNDNQDRRVKTKAECLLTHVSNMMNEACDANDALIGDEGKGTPIVDERSRANEDSDKVLETSKPTSLPSGFVSRSGQTYDASLSPMNALVESCVKFSEASSSVSHGDDGMNLLATVAAGEISRSENASPVASPERKSPAADEMCSGNDLKLKHSGEAAVRTLSELNGRATGEHPLNTVDSLQIKNELRHPAMTLSRDFSGDGETISSHDTHINVSPTNLSQNVEGPCLRTETKEDTSVTILTAKKESNADAEVSDSKLMPRASSLDDDQKVDHMSEEIIEDEKMLVSKPVTNVESENVSGEKQPELTSGVVDNENQISVEKATGTGILVQKASPIAENCESAYLKKESPASGNALIVPKDESADDMKSVVIEPDVRPIEQDSSAPDDSNECAEVNMGRKETIGQCSGSSVQPDLQAMARTESEVSKSCEQKLDANPSEVSGERHACSTAGADAAVKLDFDLNEGFPVDDVSQGEIARQDDPITSSAVHVPCPLPFPISSISGGFHPSITVASAAKGPVVPPENPLRIKGELGWKGSAATSAFRPAEPRKNTEMQSSTNDITSVDVTSIKQNRPPLDFDLNVADERCFEDVGSHGSLDSGPHDRSVGLDLDLNRVDETPEIGTFSISKLDIPALPSKPSLSSGLSNGGSVSRDFDLNNGPGLEEVGSEVPIRSQQMKNSVPFPSAVHSTRTNSAEYGNYSAWFPPGNSYSAITVPPLLSGRGEQSYVTGAGAQRIMGPTGSTPFGPEIYRGSVLSSSPAVAYPSTTAFPYPGFPFETNFPLSSNSFSGSNAFMDSSNVGGLCFPTMPTQPVGPGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGVADTERRDERLPSGLRQMSVPNPQPSIEDHLKMFQMAGAAALKRKEPDGGWDAERFGYKQHSRQ 1575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02578 1575 ProSiteProfiles BAH domain profile. 40 155 IPR001025 GO:0003682
Viun4g02578 1575 MobiDBLite consensus disorder prediction 218 249 - -
Viun4g02578 1575 SMART BAH_4 40 155 IPR001025 GO:0003682
Viun4g02578 1575 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 309 417 IPR035441 -
Viun4g02578 1575 MobiDBLite consensus disorder prediction 781 800 - -
Viun4g02578 1575 MobiDBLite consensus disorder prediction 432 491 - -
Viun4g02578 1575 MobiDBLite consensus disorder prediction 1554 1575 - -
Viun4g02578 1575 ProSiteProfiles TFIIS N-terminal domain profile. 321 406 IPR017923 -
Viun4g02578 1575 MobiDBLite consensus disorder prediction 698 717 - -
Viun4g02578 1575 SMART TFS2_5 327 405 IPR003617 GO:0005634
Viun4g02578 1575 MobiDBLite consensus disorder prediction 178 252 - -
Viun4g02578 1575 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1575 - -
Viun4g02578 1575 CDD TFIIS_I 329 404 - -
Viun4g02578 1575 MobiDBLite consensus disorder prediction 409 424 - -
Viun4g02578 1575 MobiDBLite consensus disorder prediction 611 656 - -
Viun4g02578 1575 MobiDBLite consensus disorder prediction 509 570 - -
Viun4g02578 1575 MobiDBLite consensus disorder prediction 1195 1214 - -
Viun4g02578 1575 MobiDBLite consensus disorder prediction 690 731 - -
Viun4g02578 1575 MobiDBLite consensus disorder prediction 1497 1537 - -
Viun4g02578 1575 MobiDBLite consensus disorder prediction 190 217 - -
Viun4g02578 1575 MobiDBLite consensus disorder prediction 508 665 - -
Viun4g02578 1575 Pfam TFIIS helical bundle-like domain 354 403 IPR017923 -
Viun4g02578 1575 Gene3D - 24 253 IPR043151 -
Viun4g02578 1575 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 272 407 IPR035441 -
Viun4g02578 1575 Pfam BAH domain 42 147 IPR001025 GO:0003682
Viun4g02578 1575 MobiDBLite consensus disorder prediction 406 491 - -
Viun4g02578 1575 MobiDBLite consensus disorder prediction 1556 1575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02578 Viun-Chr4 40652186 40659368 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Viun4g02578 BAH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02578 - - gmx:112998769 2505.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02578 4 40652186 40659368 Viun9g01164 9 10144480 10151372 ECH
Viun4g02578 4 40652186 40659368 Viun4g02578 4 40652186 40659368 ECH