Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02564 ATGGAGATTCAACAATCGCTGAAGCTCACCATCCACAAGAAATGGCCATCGTCACCCAAGAAAACACCAAAAGATTCAGAACCGATAAACACCGCTGCTGCAACTCCGAAGCTGAAGTGGAAGAAAATCTTCTTCCACACTAAAACCAAACCCAAAATCCAAACCCCCCCAGATGAATTCCTCTGCCCCGTTTCCCATTCCCTCATGTCCGACCCCGTCATCGTCTCCTCCGGCCACTCCTTCGAACGCTCCTCCGTCGAAGCCTGTAAAAATCTCAACTTTACACCCCAACTCCCCGACGGCACCACCCCCGATTTCTCCACCCTCATCCCCAACCTCGCCCTTAAATCCGCCATCCTCAAGTGGTGCCACACCACCCACACACCCCCTCCTCTCCCCCACAACAACCTCGTGCAACAAACCTCAATCTCCTCCCCTGACACGAAACTGGTACAACAGACCTCAATTTCCCCCGACACCCCCAACTCAAACCTCGTAGAAACCTCGATCTCCCCGAACGTCGTTCCCACAGAAGAAAAGCTCTCCGACAGAGATCCAATCCTGGATTCCCTGGACGAAAACCCACCCTCGAGCAACCTCCGCCGCCACGCGGAAACCGAGGTGCCCATAAGACCGACGCATCTGTACACGAGCTCCGAGGAATCCATAGCCACGTCCTCAGCCTCAACGCCGCCGTTTCAGCTCGCCACGCGCCCCAGTTGCTGCTACTACTCTTCCCCTTCCTCGTCAGAAATCGAACCCGCCGCAACCCCAGAAGAAGAAGAAATCACGGGGAAGCTCAAAAGCCCACAGCAGAACATAATCGAGGAAGCGCTTCTCTCTCTGAGAAAACTCACCCGAGTGAGAGAAGAAACCCGGGTCCAACTCTGCACTCCGCGGATACTCTCTGCGTTACGCTCCCTCGTGTTGTCGAAACACGTGAACGTTCAGGTGAACACTTTGGCTTCAGTGGTGAACCTTTCTCTGGAGAAGAGTAACAAACTGAAGATCGTGCGGTCGGGGATGGTGCCACCGTTGATCGAGGTTCTGAAATTCGGATCCCCTGAAGCGCAGGAACACTGTGCCGGCGCGTTGTTCAGTTTGTCTCTCGAAGACGATAACAAAACCGCCATTGGTGTTCTGGGTGGTTTGGGTCCGTTGCTTCAGATGCTCCGAGTCGAGAGCGAGCGGACTCGGCATGACTCGGCCTTGGCGCTTTACCATTTGTCGTTGGTTCAGAGTAACCGGTCCAAGATGGTTAAACTCGGTTCGGTTCCGGTTCTTTTAAGTATGGTTAAGTTGGGTCACATGACAGGTCGGGTTTTATTGATTTTGGGGAACTTAGGTTCCGGGTCGGACGGGCGGGCCGCGATGTTGGATGCGGGTGTTGTGGAGTGTTTGGTCGGGTTGCTGAGTGGTCCCGACTCGGCTACCGGGTCTACTCGGGAGAGTTGTGTGACGGTGATGTACGCGTTGAGTCACGGCGGTTTGAGGTTTAAGGCGGTTGCGAAGGCGGCGGGGCTGGTGGAGGTGTTGCAGAAGGTGGAGAAAGTGGGGAGTGAGAGGGCTAGGCACAAGGTGAAGAAGATTTTGGAGGTGATGAGAGCCAAGGAGGTGGAGGAGGAAGACGTGGATTGGGAGGAATTGCTTGACTCGGGGTTGGGTTGCCGGACTCGGGGCCGACTCGGTGGCGGGTTTGACGAGTCGAGTGCTAACTCGGCCGAGTTTTGA 1731 0.5523 MEIQQSLKLTIHKKWPSSPKKTPKDSEPINTAAATPKLKWKKIFFHTKTKPKIQTPPDEFLCPVSHSLMSDPVIVSSGHSFERSSVEACKNLNFTPQLPDGTTPDFSTLIPNLALKSAILKWCHTTHTPPPLPHNNLVQQTSISSPDTKLVQQTSISPDTPNSNLVETSISPNVVPTEEKLSDRDPILDSLDENPPSSNLRRHAETEVPIRPTHLYTSSEESIATSSASTPPFQLATRPSCCYYSSPSSSEIEPAATPEEEEITGKLKSPQQNIIEEALLSLRKLTRVREETRVQLCTPRILSALRSLVLSKHVNVQVNTLASVVNLSLEKSNKLKIVRSGMVPPLIEVLKFGSPEAQEHCAGALFSLSLEDDNKTAIGVLGGLGPLLQMLRVESERTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLSMVKLGHMTGRVLLILGNLGSGSDGRAAMLDAGVVECLVGLLSGPDSATGSTRESCVTVMYALSHGGLRFKAVAKAAGLVEVLQKVEKVGSERARHKVKKILEVMRAKEVEEEDVDWEELLDSGLGCRTRGRLGGGFDESSANSAEF 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02564 576 Gene3D - 439 544 IPR011989 -
Viun4g02564 576 PANTHER U BOX DOMAIN-CONTAINING 48 535 - -
Viun4g02564 576 Pfam Armadillo/beta-catenin-like repeat 333 369 IPR000225 GO:0005515
Viun4g02564 576 SUPERFAMILY ARM repeat 265 531 IPR016024 -
Viun4g02564 576 MobiDBLite consensus disorder prediction 1 32 - -
Viun4g02564 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 341 383 IPR000225 GO:0005515
Viun4g02564 576 SMART Ubox_2 59 122 IPR003613 GO:0004842|GO:0016567
Viun4g02564 576 FunFam RING-type E3 ubiquitin transferase 13 131 - -
Viun4g02564 576 MobiDBLite consensus disorder prediction 178 207 - -
Viun4g02564 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 139 IPR013083 -
Viun4g02564 576 FunFam RING-type E3 ubiquitin transferase 258 534 - -
Viun4g02564 576 SUPERFAMILY RING/U-box 53 125 - -
Viun4g02564 576 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842|GO:0016567
Viun4g02564 576 Gene3D - 260 438 IPR011989 -
Viun4g02564 576 MobiDBLite consensus disorder prediction 174 207 - -
Viun4g02564 576 SMART arm_5 451 494 IPR000225 GO:0005515
Viun4g02564 576 SMART arm_5 330 370 IPR000225 GO:0005515
Viun4g02564 576 SMART arm_5 371 411 IPR000225 GO:0005515
Viun4g02564 576 SMART arm_5 289 329 IPR000225 GO:0005515
Viun4g02564 576 Pfam U-box domain 57 125 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02564 Viun-Chr4 40531909 40534250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02564 57 576 U-box Gene Family AT5G40140 56.144 8.44e-175 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02564 - - gmx:100798675 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02564 4 40531909 40534250 Viun9g01152 9 9921947 9924297 ECH
Viun4g02564 4 40531909 40534250 Viun4g02564 4 40531909 40534250 ECH
Viun4g02564 4 40531909 40534250 Viun5g00637 5 3896723 3903134 PCT