Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02563 ATGGCATCAGGCGGAACCGAAGCCTTTCCAGATTTGGGTAAACACTGCCAGCACACCGGTTGCCACCAGCTCGATTTTCTTCCTTTCACCTGCCACGGTTGCCAAAAGGTGTTTTGTTTGGAGCACAGATCGTACAAGTCCCACGCGTGCAAGAATTCCGACCACAACAGCAGAAAAGTGGTTGTCTGCGAAACGTGTTCCATGTCCATAGAGACCACCGGCTACGTGGGACAGGACGAGGAGGCAATCTTGGAGAAGCATCTCAAGTCTGGTAGCTGTGATCCCACCAAGAAGAAGAAACCCATTTGCCCTGTGAAGCGCTGCAAGGAGGTTTTGACTTTCTCCAACACCAGCACCTGTAAAACTTGCCACATCAAAGTGTGTCTCAAGCACCGTTTCCCTGCTGATCATGCTTGCAGCAGAGGAGTTTCAGCTTCTTCTTCCTCATCCTCTGTTGCTGATGGTGGATGGAAGAATCGGTTTCTCGCTGCTTTAGGTTCAAGGGCTGGACAGGACTGTGCCAAAACTGGTTCATCTCGTTCTACCTCTCCTCCTTCCACTCCTTCTGTCAAGGCCTATTGA 582 0.5086 MASGGTEAFPDLGKHCQHTGCHQLDFLPFTCHGCQKVFCLEHRSYKSHACKNSDHNSRKVVVCETCSMSIETTGYVGQDEEAILEKHLKSGSCDPTKKKKPICPVKRCKEVLTFSNTSTCKTCHIKVCLKHRFPADHACSRGVSASSSSSSVADGGWKNRFLAALGSRAGQDCAKTGSSRSTSPPSTPSVKAY 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02563 193 Gene3D - 79 155 IPR035896 -
Viun4g02563 193 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 186 - -
Viun4g02563 193 MobiDBLite consensus disorder prediction 172 193 - -
Viun4g02563 193 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Viun4g02563 193 SUPERFAMILY AN1-like Zinc finger 6 58 IPR035896 -
Viun4g02563 193 Pfam AN1-like Zinc finger 103 140 IPR000058 GO:0008270
Viun4g02563 193 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Viun4g02563 193 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Viun4g02563 193 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Viun4g02563 193 Gene3D - 2 69 IPR035896 -
Viun4g02563 193 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Viun4g02563 193 SUPERFAMILY AN1-like Zinc finger 95 142 IPR035896 -
Viun4g02563 193 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02563 Viun-Chr4 40519644 40520874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02563 1 173 C2H2 Transcription Factor Family AT3G28210 60.694 5.12e-75 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02563 - - gmx:100500384 337.806