Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02562 ATGGCATCAGGTGGAAACGAAACTTTTCCAGATTTGGGTAAAAACTGCCAGCACCGCGACTGCAACCGCCTCGATTTTCTTCCTTACATCTGCGACGGTTGCCAACGGGTGTTTTGTTCGGAGCACAGATCCTACAAGTCCCACGCGTGCCCGAAGTCTGACCTAAGCAGAAAAGTGATTGTGTGCCAAACATGTTCCATGTCCATTGAGACCACCGGCTACGTAGGACAAGACGAGGATGCAATCTTGGAGAAGCACCACAAGTCTGGTAACTGTGATCCCACCAGGAAGAAGAAACCCATTTGCCCTGTCAAGGGGTGCAAGGAGATTTTATCAATATCCAACACCAGCACATGCAAAAATTGCCACCTGAAAGTGTGCCTCAAACACCGGTTCCCTTCTGATCATGCTTGTACCAGAGGAGTTTCAGCTTCTTCATCTTCTGCTGCTAATGGTGGGGGGAAGAGTTTTCTTAGTTGTTTTTGTTTCAAGAACAGAACAGAAAAGGCCTAG 513 0.4795 MASGGNETFPDLGKNCQHRDCNRLDFLPYICDGCQRVFCSEHRSYKSHACPKSDLSRKVIVCQTCSMSIETTGYVGQDEDAILEKHHKSGNCDPTRKKKPICPVKGCKEILSISNTSTCKNCHLKVCLKHRFPSDHACTRGVSASSSSAANGGGKSFLSCFCFKNRTEKA 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02562 170 Gene3D - 77 154 IPR035896 -
Viun4g02562 170 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Viun4g02562 170 SMART AN1_Zf_4 102 143 IPR000058 GO:0008270
Viun4g02562 170 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 153 - -
Viun4g02562 170 Pfam AN1-like Zinc finger 102 139 IPR000058 GO:0008270
Viun4g02562 170 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Viun4g02562 170 SUPERFAMILY AN1-like Zinc finger 94 142 IPR035896 -
Viun4g02562 170 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Viun4g02562 170 Gene3D - 2 64 IPR035896 -
Viun4g02562 170 SUPERFAMILY AN1-like Zinc finger 7 53 IPR035896 -
Viun4g02562 170 ProSiteProfiles Zinc finger AN1-type profile. 96 146 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02562 Viun-Chr4 40517567 40519088 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02562 1 166 C2H2 Transcription Factor Family AT3G28210 56.213 9.35e-64 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02562 - - var:108345238 342.428