Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02525 ATGAAGAGGGCAAGGGATGATATGTACTCTGCCTCTGCCTCCCAATTCAAGCGCCCCCCTTTTACTACTTCGTCGCGTGCTGATTCCTATGGACAAAACCAAGTCCCTGGAAGTGGAGGGGGAGGGGGTGGAGGTGGAGGAGGTAGCAACGGAGGTGGTGTTGGTGGGGGAGCAACTACTTCCCAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAGAAGTATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACAGCTGGTGTCATAGCAAGGGTGAAGGAATTGTTCAAAGGGCACAACAATTTGATTTTTGGATTTAACACATTCCTGCCAAAAGGTTATGAGATAACACTTGATGAGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCAATCAGTTTTGTGAACAAGATAAAGAAGCGGTTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTAAACATGTATCGCAAAGAGCACAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTCTTCAAGGACCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATAGTCGAAATTCGTTGCAGCGCTTTAATGAGCGGAGTTCTACGGCCCCAATGATGCGCCAAATGCCACCAGACAAGGCACAACGTTATCGAAGAGACAGGCTTCCTTCTCATGATCATGATATGAGTGCTGAACGCCCTGAGATGGATGATGACAAAACAATGTTGAACATACACAAGGAGAGGAAGCGAGACAGTAGGGATAGGAGAATGCGTGATCAGGATGAGAGAGAACAAGATCTTGATAACAGCAGGGATTTGAACTTGCAACGCTTTCCTGACAAAAAGAAATCCGTCAAGAAGGCTGAAGGTTTTGGAATGGCTGCTGACTTTCCTTCTTATGAAGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGATTACCAAACATTCTTGAAATGCCTTCACATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCAGATCTTATGGACGAATTTAACGATTTCCTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCACTATCTACTGATGCTCATTTGGCAAGACCGTCAAAGTTGGAGGACAAAGACAGAGAGCACAAGCGTGATATGGATGGAGCCAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTTTGCCTGCGGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGAAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTACTGGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTATAATAACATTAATGAAAATAAAATAAGTGTGGAGACCCTGAACCGTATTGAAGAGCACTTCACTGTTCTAAATTTAAGGTGCATTGAACGACTCTATGGTGATCATGGTCTTGACGTAATAGACATATTGCGGAAAAACCCAACCCATGCCCTGCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTGGATCATCGTAGCTTCTATTTCAAACAACAAGATTCTAAGAATTTGAGCACAAAATCTTTGGTTGCCGAGATTAAAGAAATTAAAGAAAAACAGCAGAAAGAAGATGATATTATTCAGTCGATCGCGGCTGGAAATAAACAGCCTCTAATTCCTCATCTGGAATTTGAATATCCTGATGCTGCTGGAATTCATGAAGACCTGTATAAACTTGTTCGATATTCATGTGATGAGTTATTCTCAAGTAAAGAGTTGTTAAATAAAATTATGAGGCTGTGGAGTACCTTCTTGGAGCCAATGCTTGGTGTTCCTACCCAGTCTCATGCAACAGAAAGGGCGGAGGATAGAAAAACTGGGCATAATGTTCGCAATTTTGGTGTACCAAGCATAGGGGGTGACAGAAGCCCTCATGCAGACTCTCTTTCAATGAATTCAAGGTTACCAAAATCGGATAAGAATGAAGCTGATGGTAGAATAACTGAAGCAAAGAATGTTCACCGGGCTAGTATAGCTACCAATGATAAAGAAAATGGATCTGTTGGTGGTGAACATGGTTGTAGGGATGATCCATTGATGGATAAAGGACTGAAAAATGTAGAATGCAATGACAAAGCCTCCGGATTTAGCAAACCGTTTACCTCCGATGATCAAGGAGCTAAAAACAGTGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGAACGAACTTAGATGCATCACCAGCGCGTGCCCTTACTCCATCACGACCAACTGATGTTGATGATTCTGTAGCCAAGTCTCAGGTTGCTAATGTACCATTGGTGGAGGGATGTGACATGGCAACTCCAGTACCTGTGGCCAATGGTGTTTTAAGTGAAAGCAGTAAAGTTAAAAATCATGATGAATCTGCTGGGCCTTGCAAAATTGAAAAGGAAGAGGGAGAATTATCACCAAATGGTGACTCGGAGGAGGATAACTTTGTTGCCTATGGAGATTCAAATGTGCAGTCAATGGCTAAGGCAAAACACAACACTGAAAGAAGAAAATATCAGTCTAGAAACGGAGAGGATGAATGTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCGGCTGGTGATGAATGCTTTCGAGAAGATCATGAAGAGGAGGAAGATATCGAACAAGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATCTGTGATGCACAAGCTGGAGGAGATGGCACATCTTTGCCATTGTTAGAAAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCGGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTCTATGGAAATGATGACTTCTATGTGCTTTTTAGACTTCATCAAACTCTTTACGAGAGAATCTTATCAGCAAAAACACATTCAATGAACGCAGAATTAAAATGGAAAGCAAAAGATGCTAGCTTACCAGATCCTTATTCAAGATTTATGAATGCGTTGTACAACTTGCTTGATGGATCTGCTGAAAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATAGGGAACCAGTCATACGTGTTATTCACCTTGGACAAGTTAATATACAAATTGGTTAGACAGCTTCAAACTGTTGCAACCGATGATGTGGACAGTAAGCTTCTCCAATTATATGAATATGAAAGGTCTCGGAAGCCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCACGAGGATAATATATATCGGATACAATGTTCCTCTAGCCCCTCACGACTATCCATCCAGTTTATGGACAATATGAATGAAAAGCCTGAATTGTTTGCCGTTTCTATTGATCCAAATTTCTCCTTTTATCTGCACAATGATTTTCTGTCAGTCTTTCCAGGCAAAAAGGAACCCCACGGCATCATTCTGCATAGAAACAAACGCAAATATGGAAACTTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTCTTCTTCCGGCCGAGAAAGAAGAGACGAATGCCGCCGGCAGGGACAACAACCTCCCAGTTTCGTAGGGACAGAGAGGAAAGATTCCGCAAATTGTTGGCATGCTCGTAA 4194 0.4156 MKRARDDMYSASASQFKRPPFTTSSRADSYGQNQVPGSGGGGGGGGGGSNGGGVGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRFNERSSTAPMMRQMPPDKAQRYRRDRLPSHDHDMSAERPEMDDDKTMLNIHKERKRDSRDRRMRDQDEREQDLDNSRDLNLQRFPDKKKSVKKAEGFGMAADFPSYEDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLARPSKLEDKDREHKRDMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKRAEELYNNINENKISVETLNRIEEHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYPDAAGIHEDLYKLVRYSCDELFSSKELLNKIMRLWSTFLEPMLGVPTQSHATERAEDRKTGHNVRNFGVPSIGGDRSPHADSLSMNSRLPKSDKNEADGRITEAKNVHRASIATNDKENGSVGGEHGCRDDPLMDKGLKNVECNDKASGFSKPFTSDDQGAKNSVSIAIRGENSLNRTNLDASPARALTPSRPTDVDDSVAKSQVANVPLVEGCDMATPVPVANGVLSESSKVKNHDESAGPCKIEKEEGELSPNGDSEEDNFVAYGDSNVQSMAKAKHNTERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEQDDVDGKAESEGEAEGICDAQAGGDGTSLPLLERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQTLYERILSAKTHSMNAELKWKAKDASLPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDDVDSKLLQLYEYERSRKPGKLNDSVYHANAHVILHEDNIYRIQCSSSPSRLSIQFMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILHRNKRKYGNLDELSAICSAMEGVKVINGLECKISCNSSKISYVLDTQDFFFRPRKKRRMPPAGTTTSQFRRDREERFRKLLACS 1397
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02525 1397 ProSiteProfiles PAH domain profile. 346 415 IPR003822 GO:0006355
Viun4g02525 1397 MobiDBLite consensus disorder prediction 942 963 - -
Viun4g02525 1397 ProSiteProfiles PAH domain profile. 62 132 IPR003822 GO:0006355
Viun4g02525 1397 Pfam Sin3 family co-repressor 481 573 IPR013194 -
Viun4g02525 1397 MobiDBLite consensus disorder prediction 887 911 - -
Viun4g02525 1397 MobiDBLite consensus disorder prediction 251 320 - -
Viun4g02525 1397 Gene3D Paired amphipathic helix 68 130 IPR036600 GO:0006355
Viun4g02525 1397 MobiDBLite consensus disorder prediction 216 320 - -
Viun4g02525 1397 SUPERFAMILY PAH2 domain 60 131 IPR036600 GO:0006355
Viun4g02525 1397 Gene3D Paired amphipathic helix 344 417 IPR036600 GO:0006355
Viun4g02525 1397 PANTHER SIN3B-RELATED 62 1258 IPR039774 GO:0003714
Viun4g02525 1397 MobiDBLite consensus disorder prediction 802 816 - -
Viun4g02525 1397 SUPERFAMILY PAH2 domain 349 415 IPR036600 GO:0006355
Viun4g02525 1397 MobiDBLite consensus disorder prediction 762 844 - -
Viun4g02525 1397 MobiDBLite consensus disorder prediction 436 459 - -
Viun4g02525 1397 SUPERFAMILY PAH2 domain 143 215 IPR036600 GO:0006355
Viun4g02525 1397 MobiDBLite consensus disorder prediction 939 1078 - -
Viun4g02525 1397 MobiDBLite consensus disorder prediction 15 36 - -
Viun4g02525 1397 MobiDBLite consensus disorder prediction 988 1007 - -
Viun4g02525 1397 MobiDBLite consensus disorder prediction 1044 1064 - -
Viun4g02525 1397 Pfam C-terminal domain of Sin3a protein 1116 1363 IPR031693 -
Viun4g02525 1397 MobiDBLite consensus disorder prediction 1008 1028 - -
Viun4g02525 1397 Coils Coil 552 572 - -
Viun4g02525 1397 FunFam Paired amphipathic helix SIN3-like protein 145 216 - -
Viun4g02525 1397 FunFam Paired amphipathic helix protein Sin3 68 130 - -
Viun4g02525 1397 SMART hdac_interact2seq4b 479 579 IPR013194 -
Viun4g02525 1397 MobiDBLite consensus disorder prediction 438 459 - -
Viun4g02525 1397 Pfam Paired amphipathic helix repeat 368 412 IPR003822 GO:0006355
Viun4g02525 1397 Pfam Paired amphipathic helix repeat 169 213 IPR003822 GO:0006355
Viun4g02525 1397 Pfam Paired amphipathic helix repeat 85 129 IPR003822 GO:0006355
Viun4g02525 1397 MobiDBLite consensus disorder prediction 1 60 - -
Viun4g02525 1397 Gene3D Paired amphipathic helix 145 217 IPR036600 GO:0006355
Viun4g02525 1397 MobiDBLite consensus disorder prediction 216 243 - -
Viun4g02525 1397 ProSiteProfiles PAH domain profile. 146 216 IPR003822 GO:0006355
Viun4g02525 1397 FunFam Paired amphipathic helix protein SIN3 343 417 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun4g02525 Viun-Chr4 40174610 40184395 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02525 47 165 WRKY Transcription Factor Family AT4G12020 50.000 5.05e-23 105
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun4g02525 Sin3a_C 2.1e-55 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02525 K11644 - gmx:100807181 2438.3