Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun4g02525 | ATGAAGAGGGCAAGGGATGATATGTACTCTGCCTCTGCCTCCCAATTCAAGCGCCCCCCTTTTACTACTTCGTCGCGTGCTGATTCCTATGGACAAAACCAAGTCCCTGGAAGTGGAGGGGGAGGGGGTGGAGGTGGAGGAGGTAGCAACGGAGGTGGTGTTGGTGGGGGAGCAACTACTTCCCAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAGAAGTATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACAGCTGGTGTCATAGCAAGGGTGAAGGAATTGTTCAAAGGGCACAACAATTTGATTTTTGGATTTAACACATTCCTGCCAAAAGGTTATGAGATAACACTTGATGAGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCAATCAGTTTTGTGAACAAGATAAAGAAGCGGTTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTAAACATGTATCGCAAAGAGCACAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTCTTCAAGGACCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATAGTCGAAATTCGTTGCAGCGCTTTAATGAGCGGAGTTCTACGGCCCCAATGATGCGCCAAATGCCACCAGACAAGGCACAACGTTATCGAAGAGACAGGCTTCCTTCTCATGATCATGATATGAGTGCTGAACGCCCTGAGATGGATGATGACAAAACAATGTTGAACATACACAAGGAGAGGAAGCGAGACAGTAGGGATAGGAGAATGCGTGATCAGGATGAGAGAGAACAAGATCTTGATAACAGCAGGGATTTGAACTTGCAACGCTTTCCTGACAAAAAGAAATCCGTCAAGAAGGCTGAAGGTTTTGGAATGGCTGCTGACTTTCCTTCTTATGAAGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGATTACCAAACATTCTTGAAATGCCTTCACATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCAGATCTTATGGACGAATTTAACGATTTCCTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCACTATCTACTGATGCTCATTTGGCAAGACCGTCAAAGTTGGAGGACAAAGACAGAGAGCACAAGCGTGATATGGATGGAGCCAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTTTGCCTGCGGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGAAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTACTGGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTATAATAACATTAATGAAAATAAAATAAGTGTGGAGACCCTGAACCGTATTGAAGAGCACTTCACTGTTCTAAATTTAAGGTGCATTGAACGACTCTATGGTGATCATGGTCTTGACGTAATAGACATATTGCGGAAAAACCCAACCCATGCCCTGCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTGGATCATCGTAGCTTCTATTTCAAACAACAAGATTCTAAGAATTTGAGCACAAAATCTTTGGTTGCCGAGATTAAAGAAATTAAAGAAAAACAGCAGAAAGAAGATGATATTATTCAGTCGATCGCGGCTGGAAATAAACAGCCTCTAATTCCTCATCTGGAATTTGAATATCCTGATGCTGCTGGAATTCATGAAGACCTGTATAAACTTGTTCGATATTCATGTGATGAGTTATTCTCAAGTAAAGAGTTGTTAAATAAAATTATGAGGCTGTGGAGTACCTTCTTGGAGCCAATGCTTGGTGTTCCTACCCAGTCTCATGCAACAGAAAGGGCGGAGGATAGAAAAACTGGGCATAATGTTCGCAATTTTGGTGTACCAAGCATAGGGGGTGACAGAAGCCCTCATGCAGACTCTCTTTCAATGAATTCAAGGTTACCAAAATCGGATAAGAATGAAGCTGATGGTAGAATAACTGAAGCAAAGAATGTTCACCGGGCTAGTATAGCTACCAATGATAAAGAAAATGGATCTGTTGGTGGTGAACATGGTTGTAGGGATGATCCATTGATGGATAAAGGACTGAAAAATGTAGAATGCAATGACAAAGCCTCCGGATTTAGCAAACCGTTTACCTCCGATGATCAAGGAGCTAAAAACAGTGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGAACGAACTTAGATGCATCACCAGCGCGTGCCCTTACTCCATCACGACCAACTGATGTTGATGATTCTGTAGCCAAGTCTCAGGTTGCTAATGTACCATTGGTGGAGGGATGTGACATGGCAACTCCAGTACCTGTGGCCAATGGTGTTTTAAGTGAAAGCAGTAAAGTTAAAAATCATGATGAATCTGCTGGGCCTTGCAAAATTGAAAAGGAAGAGGGAGAATTATCACCAAATGGTGACTCGGAGGAGGATAACTTTGTTGCCTATGGAGATTCAAATGTGCAGTCAATGGCTAAGGCAAAACACAACACTGAAAGAAGAAAATATCAGTCTAGAAACGGAGAGGATGAATGTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCGGCTGGTGATGAATGCTTTCGAGAAGATCATGAAGAGGAGGAAGATATCGAACAAGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATCTGTGATGCACAAGCTGGAGGAGATGGCACATCTTTGCCATTGTTAGAAAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCGGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTCTATGGAAATGATGACTTCTATGTGCTTTTTAGACTTCATCAAACTCTTTACGAGAGAATCTTATCAGCAAAAACACATTCAATGAACGCAGAATTAAAATGGAAAGCAAAAGATGCTAGCTTACCAGATCCTTATTCAAGATTTATGAATGCGTTGTACAACTTGCTTGATGGATCTGCTGAAAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATAGGGAACCAGTCATACGTGTTATTCACCTTGGACAAGTTAATATACAAATTGGTTAGACAGCTTCAAACTGTTGCAACCGATGATGTGGACAGTAAGCTTCTCCAATTATATGAATATGAAAGGTCTCGGAAGCCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCACGAGGATAATATATATCGGATACAATGTTCCTCTAGCCCCTCACGACTATCCATCCAGTTTATGGACAATATGAATGAAAAGCCTGAATTGTTTGCCGTTTCTATTGATCCAAATTTCTCCTTTTATCTGCACAATGATTTTCTGTCAGTCTTTCCAGGCAAAAAGGAACCCCACGGCATCATTCTGCATAGAAACAAACGCAAATATGGAAACTTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTCTTCTTCCGGCCGAGAAAGAAGAGACGAATGCCGCCGGCAGGGACAACAACCTCCCAGTTTCGTAGGGACAGAGAGGAAAGATTCCGCAAATTGTTGGCATGCTCGTAA | 4194 | 0.4156 | MKRARDDMYSASASQFKRPPFTTSSRADSYGQNQVPGSGGGGGGGGGGSNGGGVGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRFNERSSTAPMMRQMPPDKAQRYRRDRLPSHDHDMSAERPEMDDDKTMLNIHKERKRDSRDRRMRDQDEREQDLDNSRDLNLQRFPDKKKSVKKAEGFGMAADFPSYEDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLARPSKLEDKDREHKRDMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKRAEELYNNINENKISVETLNRIEEHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYPDAAGIHEDLYKLVRYSCDELFSSKELLNKIMRLWSTFLEPMLGVPTQSHATERAEDRKTGHNVRNFGVPSIGGDRSPHADSLSMNSRLPKSDKNEADGRITEAKNVHRASIATNDKENGSVGGEHGCRDDPLMDKGLKNVECNDKASGFSKPFTSDDQGAKNSVSIAIRGENSLNRTNLDASPARALTPSRPTDVDDSVAKSQVANVPLVEGCDMATPVPVANGVLSESSKVKNHDESAGPCKIEKEEGELSPNGDSEEDNFVAYGDSNVQSMAKAKHNTERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEQDDVDGKAESEGEAEGICDAQAGGDGTSLPLLERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQTLYERILSAKTHSMNAELKWKAKDASLPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDDVDSKLLQLYEYERSRKPGKLNDSVYHANAHVILHEDNIYRIQCSSSPSRLSIQFMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILHRNKRKYGNLDELSAICSAMEGVKVINGLECKISCNSSKISYVLDTQDFFFRPRKKRRMPPAGTTTSQFRRDREERFRKLLACS | 1397 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun4g02525 | 1397 | ProSiteProfiles | PAH domain profile. | 346 | 415 | IPR003822 | GO:0006355 | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 942 | 963 | - | - | |
Viun4g02525 | 1397 | ProSiteProfiles | PAH domain profile. | 62 | 132 | IPR003822 | GO:0006355 | |
Viun4g02525 | 1397 | Pfam | Sin3 family co-repressor | 481 | 573 | IPR013194 | - | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 887 | 911 | - | - | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 251 | 320 | - | - | |
Viun4g02525 | 1397 | Gene3D | Paired amphipathic helix | 68 | 130 | IPR036600 | GO:0006355 | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 216 | 320 | - | - | |
Viun4g02525 | 1397 | SUPERFAMILY | PAH2 domain | 60 | 131 | IPR036600 | GO:0006355 | |
Viun4g02525 | 1397 | Gene3D | Paired amphipathic helix | 344 | 417 | IPR036600 | GO:0006355 | |
Viun4g02525 | 1397 | PANTHER | SIN3B-RELATED | 62 | 1258 | IPR039774 | GO:0003714 | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 802 | 816 | - | - | |
Viun4g02525 | 1397 | SUPERFAMILY | PAH2 domain | 349 | 415 | IPR036600 | GO:0006355 | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 762 | 844 | - | - | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 436 | 459 | - | - | |
Viun4g02525 | 1397 | SUPERFAMILY | PAH2 domain | 143 | 215 | IPR036600 | GO:0006355 | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 939 | 1078 | - | - | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 15 | 36 | - | - | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 988 | 1007 | - | - | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 1044 | 1064 | - | - | |
Viun4g02525 | 1397 | Pfam | C-terminal domain of Sin3a protein | 1116 | 1363 | IPR031693 | - | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 1008 | 1028 | - | - | |
Viun4g02525 | 1397 | Coils | Coil | 552 | 572 | - | - | |
Viun4g02525 | 1397 | FunFam | Paired amphipathic helix SIN3-like protein | 145 | 216 | - | - | |
Viun4g02525 | 1397 | FunFam | Paired amphipathic helix protein Sin3 | 68 | 130 | - | - | |
Viun4g02525 | 1397 | SMART | hdac_interact2seq4b | 479 | 579 | IPR013194 | - | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 438 | 459 | - | - | |
Viun4g02525 | 1397 | Pfam | Paired amphipathic helix repeat | 368 | 412 | IPR003822 | GO:0006355 | |
Viun4g02525 | 1397 | Pfam | Paired amphipathic helix repeat | 169 | 213 | IPR003822 | GO:0006355 | |
Viun4g02525 | 1397 | Pfam | Paired amphipathic helix repeat | 85 | 129 | IPR003822 | GO:0006355 | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Viun4g02525 | 1397 | Gene3D | Paired amphipathic helix | 145 | 217 | IPR036600 | GO:0006355 | |
Viun4g02525 | 1397 | MobiDBLite | consensus disorder prediction | 216 | 243 | - | - | |
Viun4g02525 | 1397 | ProSiteProfiles | PAH domain profile. | 146 | 216 | IPR003822 | GO:0006355 | |
Viun4g02525 | 1397 | FunFam | Paired amphipathic helix protein SIN3 | 343 | 417 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun4g02525 | Viun-Chr4 | 40174610 | 40184395 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun4g02525 | 47 | 165 | WRKY Transcription Factor Family | AT4G12020 | 50.000 | 5.05e-23 | 105 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Viun4g02525 | Sin3a_C | 2.1e-55 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun4g02525 | K11644 | - | gmx:100807181 | 2438.3 |