Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02524 ATGAAGAGGGCAAGGGATGATATGTACTCTGCCTCTGCCTCCCAATTCAAGCGCCCCCCTTTTACTACTTCGTCGCGTGCTGATTCCTATGGACAAAACCAAGTCCCTGGAAGTGGAGGGGGAGGGGGTGGAGGTGGAGGAGGTAGCAACGGAGGTGGTGTTGGTGGGGGAGCAACTACTTCCCAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAGAAGTATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACAGCTGGTGTCATAGCAAGGGTGAAGGAATTGTTCAAAGGGCACAACAATTTGATTTTTGGATTTAACACATTCCTGCCAAAAGGTTATGAGATAACACTTGATGAGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCAATCAGTTTTGTGAACAAGATAAAGAAGCGGTTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTAAACATGTATCGCAAAGAGCACAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTCTTCAAGGACCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATAGTCGAAATTCGTTGCAGCGCTTTAATGAGCGGAGTTCTACGGCCCCAATGATGCGCCAAATGCCACCAGACAAGCAACGTTATCGAAGAGACAGGCTTCCTTCTCATGATCATGATATGAGTGCTGAACGCCCTGAGATGGATGATGACAAAACAATGTTGAACATACACAAGGAGAGGAAGCGAGACAGTAGGGATAGGAGAATGCGTGATCAGGATGAGAGAGAACAAGATCTTGATAACAGCAGGGATTTGAACTTGCAACGCTTTCCTGACAAAAAGAAATCCGTCAAGAAGGCTGAAGGTTTTGGAATGGCTGCTGACTTTCCTTCTTATGAAGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGATTACCAAACATTCTTGAAATGCCTTCACATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCAGATCTTATGGACGAATTTAACGATTTCCTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCACTATCTACTGATGCTCATTTGGCAAGACCGTCAAAGTTGGAGGACAAAGACAGAGAGCACAAGCGTGATATGGATGGAGCCAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTTTGCCTGCGGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGAAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTACTGGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTATAATAACATTAATGAAAATAAAATAAGTGTGGAGACCCTGAACCGTATTGAAGAGCACTTCACTGTTCTAAATTTAAGGTGCATTGAACGACTCTATGGTGATCATGGTCTTGACGTAATAGACATATTGCGGAAAAACCCAACCCATGCCCTGCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTGGATCATCGTAGCTTCTATTTCAAACAACAAGATTCTAAGAATTTGAGCACAAAATCTTTGGTTGCCGAGATTAAAGAAATTAAAGAAAAACAGCAGAAAGAAGATGATATTATTCAGTCGATCGCGGCTGGAAATAAACAGCCTCTAATTCCTCATCTGGAATTTGAATATCCTGATGCTGCTGGAATTCATGAAGACCTGTATAAACTTGTTCGATATTCATGTGATGAGTTATTCTCAAGTAAAGAGTTGTTAAATAAAATTATGAGGCTGTGGAGTACCTTCTTGGAGCCAATGCTTGGTGTTCCTACCCAGTCTCATGCAACAGAAAGGGCGGAGGATAGAAAAACTGGGCATAATGTTCGCAATTTTGGTGTACCAAGCATAGGGGGTGACAGAAGCCCTCATGCAGACTCTCTTTCAATGAATTCAAGGTTACCAAAATCGGATAAGAATGAAGCTGATGGTAGAATAACTGAAGCAAAGAATGTTCACCGGGCTAGTATAGCTACCAATGATAAAGAAAATGGATCTGTTGGTGGTGAACATGGTTGTAGGGATGATCCATTGATGGATAAAGGACTGAAAAATGTAGAATGCAATGACAAAGCCTCCGGATTTAGCAAACCGTTTACCTCCGATGATCAAGGAGCTAAAAACAGTGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGAACGAACTTAGATGCATCACCAGCGCGTGCCCTTACTCCATCACGACCAACTGATGTTGATGATTCTGTAGCCAAGTCTCAGGTTGCTAATGTACCATTGGTGGAGGGATGTGACATGGCAACTCCAGTACCTGTGGCCAATGGTGTTTTAAGTGAAAGCAGTAAAGTTAAAAATCATGATGAATCTGCTGGGCCTTGCAAAATTGAAAAGGAAGAGGGAGAATTATCACCAAATGGTGACTCGGAGGAGGATAACTTTGTTGCCTATGGAGATTCAAATGTGCAGTCAATGGCTAAGGCAAAACACAACACTGAAAGAAGAAAATATCAGTCTAGAAACGGAGAGGATGAATGTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCGGCTGGTGATGAATGCTTTCGAGAAGATCATGAAGAGGAGGAAGATATCGAACAAGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATCTGTGATGCACAAGCTGGAGGAGATGGCACATCTTTGCCATTGTTAGAAAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCGGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTCTATGGAAATGATGACTTCTATGTGCTTTTTAGACTTCATCAAACTCTTTACGAGAGAATCTTATCAGCAAAAACACATTCAATGAACGCAGAATTAAAATGGAAAGCAAAAGATGCTAGCTTACCAGATCCTTATTCAAGATTTATGAATGCGTTGTACAACTTGCTTGATGGATCTGCTGAAAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATAGGGAACCAGTCATACGTGTTATTCACCTTGGACAAGTTAATATACAAATTGGTTAGACAGCTTCAAACTGTTGCAACCGATGATGTGGACAGTAAGCTTCTCCAATTATATGAATATGAAAGGTCTCGGAAGCCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCACGAGGATAATATATATCGGATACAATGTTCCTCTAGCCCCTCACGACTATCCATCCAGTTTATGGACAATATGAATGAAAAGCCTGAATTGTTTGCCGTTTCTATTGATCCAAATTTCTCCTTTTATCTGCACAATGATTTTCTGTCAGTCTTTCCAGGCAAAAAGGAACCCCACGGCATCATTCTGCATAGAAACAAACGCAAATATGGAAACTTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTCTTCTTCCGGCCGAGAAAGAAGAGACGAATGCCGCCGGCAGGGACAACAACCTCCCAGTTTCGTAGGGACAGAGAGGAAAGATTCCGCAAATTGTTGGCATGCTCGTAA 4191 0.4154 MKRARDDMYSASASQFKRPPFTTSSRADSYGQNQVPGSGGGGGGGGGGSNGGGVGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRFNERSSTAPMMRQMPPDKQRYRRDRLPSHDHDMSAERPEMDDDKTMLNIHKERKRDSRDRRMRDQDEREQDLDNSRDLNLQRFPDKKKSVKKAEGFGMAADFPSYEDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLARPSKLEDKDREHKRDMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKRAEELYNNINENKISVETLNRIEEHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYPDAAGIHEDLYKLVRYSCDELFSSKELLNKIMRLWSTFLEPMLGVPTQSHATERAEDRKTGHNVRNFGVPSIGGDRSPHADSLSMNSRLPKSDKNEADGRITEAKNVHRASIATNDKENGSVGGEHGCRDDPLMDKGLKNVECNDKASGFSKPFTSDDQGAKNSVSIAIRGENSLNRTNLDASPARALTPSRPTDVDDSVAKSQVANVPLVEGCDMATPVPVANGVLSESSKVKNHDESAGPCKIEKEEGELSPNGDSEEDNFVAYGDSNVQSMAKAKHNTERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEQDDVDGKAESEGEAEGICDAQAGGDGTSLPLLERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQTLYERILSAKTHSMNAELKWKAKDASLPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDDVDSKLLQLYEYERSRKPGKLNDSVYHANAHVILHEDNIYRIQCSSSPSRLSIQFMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILHRNKRKYGNLDELSAICSAMEGVKVINGLECKISCNSSKISYVLDTQDFFFRPRKKRRMPPAGTTTSQFRRDREERFRKLLACS 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02524 1396 ProSiteProfiles PAH domain profile. 62 132 IPR003822 GO:0006355
Viun4g02524 1396 SMART hdac_interact2seq4b 478 578 IPR013194 -
Viun4g02524 1396 Gene3D Paired amphipathic helix 145 217 IPR036600 GO:0006355
Viun4g02524 1396 Gene3D Paired amphipathic helix 68 130 IPR036600 GO:0006355
Viun4g02524 1396 MobiDBLite consensus disorder prediction 435 458 - -
Viun4g02524 1396 MobiDBLite consensus disorder prediction 216 320 - -
Viun4g02524 1396 MobiDBLite consensus disorder prediction 1007 1027 - -
Viun4g02524 1396 SUPERFAMILY PAH2 domain 60 131 IPR036600 GO:0006355
Viun4g02524 1396 SUPERFAMILY PAH2 domain 348 414 IPR036600 GO:0006355
Viun4g02524 1396 MobiDBLite consensus disorder prediction 437 458 - -
Viun4g02524 1396 SUPERFAMILY PAH2 domain 143 215 IPR036600 GO:0006355
Viun4g02524 1396 MobiDBLite consensus disorder prediction 15 36 - -
Viun4g02524 1396 PANTHER SIN3B-RELATED 62 1257 IPR039774 GO:0003714
Viun4g02524 1396 ProSiteProfiles PAH domain profile. 345 414 IPR003822 GO:0006355
Viun4g02524 1396 Pfam C-terminal domain of Sin3a protein 1115 1362 IPR031693 -
Viun4g02524 1396 MobiDBLite consensus disorder prediction 250 320 - -
Viun4g02524 1396 FunFam Paired amphipathic helix protein SIN3 342 416 - -
Viun4g02524 1396 MobiDBLite consensus disorder prediction 801 815 - -
Viun4g02524 1396 Pfam Sin3 family co-repressor 480 572 IPR013194 -
Viun4g02524 1396 Gene3D Paired amphipathic helix 343 416 IPR036600 GO:0006355
Viun4g02524 1396 MobiDBLite consensus disorder prediction 761 843 - -
Viun4g02524 1396 MobiDBLite consensus disorder prediction 941 962 - -
Viun4g02524 1396 FunFam Paired amphipathic helix SIN3-like protein 145 216 - -
Viun4g02524 1396 MobiDBLite consensus disorder prediction 886 910 - -
Viun4g02524 1396 FunFam Paired amphipathic helix protein Sin3 68 130 - -
Viun4g02524 1396 Pfam Paired amphipathic helix repeat 367 411 IPR003822 GO:0006355
Viun4g02524 1396 Pfam Paired amphipathic helix repeat 169 213 IPR003822 GO:0006355
Viun4g02524 1396 Pfam Paired amphipathic helix repeat 85 129 IPR003822 GO:0006355
Viun4g02524 1396 MobiDBLite consensus disorder prediction 1043 1063 - -
Viun4g02524 1396 MobiDBLite consensus disorder prediction 1 60 - -
Viun4g02524 1396 MobiDBLite consensus disorder prediction 216 243 - -
Viun4g02524 1396 MobiDBLite consensus disorder prediction 938 1077 - -
Viun4g02524 1396 Coils Coil 551 571 - -
Viun4g02524 1396 ProSiteProfiles PAH domain profile. 146 216 IPR003822 GO:0006355
Viun4g02524 1396 MobiDBLite consensus disorder prediction 987 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02524 Viun-Chr4 40174609 40184395 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02524 47 165 WRKY Transcription Factor Family AT4G12020 50.000 5.40e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun4g02524 Sin3a_C 2.1e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02524 K11644 - gmx:100807181 2432.14