Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02523 ATGGAACAAGGACAAAACCAAAGCACTCCTCAGAGACCTTCCATGGATGATGCCTTGTATTTTCTGAATAGAGTCAAAGAAGTGTTTCGGGACGAAAAGGAGAAGTATGACATGTTGATTCGGATCCTGAAAGATTACAAGGAAGAAAGGATTACCCCTGCTGTTGTGGCTGCGAGGATGAAGGAGTTACTCAGAGGCCACCACAGTTTGATTTTGAGATTCAACAAGTTCTTGCCAAAGGAGCATGAGATCAAACTCAAGCACGAACCTCGTCCAGAATTAGTCCGTTTAGTTGACAACATAAAGGAACGATTCAAAAATGAGGAGGGTTCTTACGAATCATTCGTGATGAGTATTACAACCTACAAACTAGACCATCGAAAGACAACTTGTGATCTTCATGATGAGATTGGTGTCCTTTTAAAGGACCACCAAGATTTGCTTGCGGAGTTCAGGAGATTAATCCCTAATTATGATGCAATTGACTATGACGAGAGTGTTCATGATGAAAAGCCAAGACCGAAGTGCAAGCAAACTTGTTTAGGTTGTTTTACCGTACTGTTGTTTTGTACAATAATGTGGTCACTGATATTTGTTTACTTTGTCTGGTCTCATGATGAGATAACAAAGAAAACAAAGATATGTTCGTTTTGCTTCCTAGGTTTGGTTCTCATCACCTTGGTCGCTAACATGTTCCACAAACCCTATAACGTTGTTTGCGTGAGAGAGTATTTAACTAAAAGGGTGAGAGGGAGAATGCTTTCGAAGATTCTTGCCATTGGAGATGGATGGTTCTTTCAGAAGGAAACTTTCAAATGTGATCTTTGCCATAGATCTGCCGAAGAAAGTGTGGTTAAGCCTTTCAATGGAGAGAAAATGAGTTTAGTGGTTCAAACAATTTGTGCAATGGGAATAGGTTTCAGTGTGGGTCTTATGTTTTCATGGAAAGCAGCCATTGCAGTGATAGTTGTTCAACTTGTTATCATTGTTTGCTTCTACAAAAGAGATGTCCTCAAGAACATGATGAAGGTCCATGATGATTGA 1044 0.3994 MEQGQNQSTPQRPSMDDALYFLNRVKEVFRDEKEKYDMLIRILKDYKEERITPAVVAARMKELLRGHHSLILRFNKFLPKEHEIKLKHEPRPELVRLVDNIKERFKNEEGSYESFVMSITTYKLDHRKTTCDLHDEIGVLLKDHQDLLAEFRRLIPNYDAIDYDESVHDEKPRPKCKQTCLGCFTVLLFCTIMWSLIFVYFVWSHDEITKKTKICSFCFLGLVLITLVANMFHKPYNVVCVREYLTKRVRGRMLSKILAIGDGWFFQKETFKCDLCHRSAEESVVKPFNGEKMSLVVQTICAMGIGFSVGLMFSWKAAIAVIVVQLVIIVCFYKRDVLKNMMKVHDD 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02523 347 SUPERFAMILY PAH2 domain 96 156 IPR036600 GO:0006355
Viun4g02523 347 FunFam Paired amphipathic helix protein Sin3 17 79 - -
Viun4g02523 347 SUPERFAMILY ABC transporter transmembrane region 183 333 IPR036640 GO:0005524|GO:0016020
Viun4g02523 347 Coils Coil 29 49 - -
Viun4g02523 347 Gene3D Paired amphipathic helix 95 156 IPR036600 GO:0006355
Viun4g02523 347 PANTHER SIN3B-RELATED 15 167 IPR039774 GO:0003714
Viun4g02523 347 ProSiteProfiles PAH domain profile. 11 81 IPR003822 GO:0006355
Viun4g02523 347 ProSiteProfiles PAH domain profile. 84 158 IPR003822 GO:0006355
Viun4g02523 347 Gene3D ABC transporter type 1, transmembrane domain 184 335 IPR036640 GO:0005524|GO:0016020
Viun4g02523 347 Pfam ABC transporter transmembrane region 193 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g02523 347 SUPERFAMILY PAH2 domain 8 80 IPR036600 GO:0006355
Viun4g02523 347 Pfam Paired amphipathic helix repeat 34 78 IPR003822 GO:0006355
Viun4g02523 347 Gene3D Paired amphipathic helix 17 79 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02523 Viun-Chr4 40159860 40162897 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02523 14 89 WRKY Transcription Factor Family AT4G12020 40.789 5.03e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun4g02523 ABC_membrane 7.1e-09 CL0241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02523 K05658 - var:108345401 546.969