Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02522 ATGGCTAACGGCTGTGGAAACAAACGAGGTCTTAAAAGTGGCAATGGAGGTCCTGTTCGTAGGTCTCAGAAGCCGGTGGCCACTGTGAACGATGCCATTTGGTTTGTGAGTGAACTCAAACACGAGTTTCGAAACCAAAAGGAGAAGTTTCGCTTGTTCCATCAGTTCTTGGTCGATTACAGGGATGATAGTATCAGCTATGCTACTCTTGTGGGGAAGGTGAAGGAGCTTTTGAGAGGGCACAACAAATTGATTATGGGTTTTAACTATTTCATAGAGAAGGACTTTTGGATTGAACTTGACGACGAGACTGCACCACATGATGAAGAGCAGTTCATGAACAAGATAAAGAACCGATTCCAAGATGATGAGCTTGCTTGCAACTTAATCTTGGACACTATATCAAAGTACAAGGAAGGGCTAAAGGACATTACTGAGGTTTCACGTGAGCTTGCCATCTACATTGAGGGCAATGAAGATCTGGTGGAGGATTTCACTAGACTCTTAGAGCGTCATGGTTGTGGAGATGTTGTTGATGAGGATGAAGGTGGAAATCAGCAGACAACATTTGATCAAGTGGAGTTGAAGGAGATATGA 597 0.4355 MANGCGNKRGLKSGNGGPVRRSQKPVATVNDAIWFVSELKHEFRNQKEKFRLFHQFLVDYRDDSISYATLVGKVKELLRGHNKLIMGFNYFIEKDFWIELDDETAPHDEEQFMNKIKNRFQDDELACNLILDTISKYKEGLKDITEVSRELAIYIEGNEDLVEDFTRLLERHGCGDVVDEDEGGNQQTTFDQVELKEI 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02522 198 ProSiteProfiles PAH domain profile. 24 95 IPR003822 GO:0006355
Viun4g02522 198 PANTHER SIN3B-RELATED 27 171 IPR039774 GO:0003714
Viun4g02522 198 Gene3D Paired amphipathic helix 110 169 IPR036600 GO:0006355
Viun4g02522 198 Pfam Paired amphipathic helix repeat 49 91 IPR003822 GO:0006355
Viun4g02522 198 SUPERFAMILY PAH2 domain 25 93 IPR036600 GO:0006355
Viun4g02522 198 ProSiteProfiles PAH domain profile. 98 172 IPR003822 GO:0006355
Viun4g02522 198 Gene3D Paired amphipathic helix 24 95 IPR036600 GO:0006355
Viun4g02522 198 SUPERFAMILY PAH2 domain 103 170 IPR036600 GO:0006355
Viun4g02522 198 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02522 Viun-Chr4 40154853 40156818 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02522 2 121 WRKY Transcription Factor Family AT4G12020 25.620 7.73e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun4g02522 PAH 9.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02522 K11644 - vun:114182708 397.897