Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02521 ATGGGTGGTGGTAGTGGTGGTAGTGCTGATAATGGTGATGCTGACCATAATAATACTTCTATTTCCATGGCTGCTGCTAAGAACAAGAAGAGTGGCTCCTTTAGCTCCATTTTTATGCATGCTGATCGCCTAGACGTGTTTCTCATGATTTTTGGATTGATTGGAGCCATTGGTGATGGCATAGGCACCCCTTTGGTGTTGTTTATCACCAGCAAAATCATGAACAATATTGGAAACTTTTCTGGTGGCATAGATAGCACTTTCATCCATGGCATCAACAAGAATGCTGTGGTTTTGTTATACCTGGCTGGTGGGTCTTTTGTGGCTTGTTTTCTAGAGGGTTATTGTTGGACAAGAACCGGTGAAAGACAAGCTGCAAGAATGAGAGTGAGGTACCTAAAGGCAGTGTTGAGGCAAGAAGTTGCATACTTTGATTTGCATGTCAGTAGCACATCTGAGGTCATCACCAGTGTCTCTAACGACAGCCTCGTAATTCAGGATGTTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCCTCTATGTTTGTGGGGAGCTACATAGTGGGTTTTGCATTATTATGGAGATTGACACTTGTGGGGTTCCCTTTTGTGGTTCTACTTGTGATCCCTGGTTTTATGTATGGGAGGACACTGATGGGGTTGGCCAGTAAGATAAGAGAAGAGTACAACAAAGCTGGTACAGTGGCAGAACAAGCAATATCTTCCATCAGAACCGTTTACTCCTTTGTGGGCGAAAGCAAGACCATTGATGCTTTCTCTGATGCTTTACAAGGCTCGGTGGAGTTAGGACTCAGACAAGGCTTGGCAAAAGGCTTAGCCATCGGAAGCAATGGTGTTGTGTTTGCAATTTGGGCTTTCATATCCTATTATGGTAGCAGATTGGTCATGTACCATGGTGCCAAAGGTGGAACTGTGTTTGCAGTTGGAGCAGCCATAGCACTCGGAGGATTGGCCTTAGGTGCTGGTTTGTCGAACGTGAAGTACTTCTCAGAGGCGAGCACTGCGGGAGAACGCATAATGGAAGTGATAAAAAGGGTTCCGAAGATCGATTCAGACAACATGGGTGGGGAGATTCTGGGGGAGGTTCGTGGCGAGGTTGAGTTTGAGAATGTGAGCTTCGTGTACCCATCGAGGCCCGACAGTGTGGTTCTGAAGGAGTTTTCCCTGAGGGTGCCTGCAGGGAAAACGGTGGCGCTGGTGGGAGGAAGTGGGTCGGGAAAATCCACTGTGATATCTCTTCTGCAGAGGTTCTATGACCCGGTTGAAGGAGAGATACGTGTTGATGGCGTGGCGATTCAGAGGTTGCAGCTGAAGTGGTTAAGGTCTCAAATGGGGTTGGTGAGTCAAGAGCCTGCACTGTTTGCGACGAGCATCAAGGAGAATATTCTGTTTGGAAGAGAAGATGCAAGTGAGGAAGAGGTTGTGGAAGCTGCGAAAGCTTCCAATGCTCATAATTTCATCTCACAGTTGCCACAGGGATATCATACTCAGGTAGGAGAGAGAGGAATTCAAATGTCAGGGGGACAAAAGCAGAGAATTGCTATAGCACGAGCAATAATAAAGAAGCCACGAATTCTGTTGTTGGATGAAGCAACGAGTGCACTAGATTCTGAATCCGAACGAGTTGTGCAAGAAGCCTTGGACAAAGCAGCAGTGGGGCGCACCACCATCATCATCGCTCATCGATTATCCACCATCAGAAATGCAGATGTCATTGCTGTCGTGCAAAGTGGGAAGATCATGGAAATGGGTTCACACCATGAACTCATCCAAAACGACAATGGCCTCTACACCTCTCTCGTTCGTCTGCAACAAGCAAAACATGAAAAAGAAGACACCCCTTTTCACCCTCTTCCTCCTCCTCCTTCATCATCATCATTATTATCATCATCATCCATATCAAACAAAGACAACAATCACAGCACAAGCAGTCGTAGGTTGTCTCTCGTGAGTCGATCCAGCTCCGCCAACTCAATCCCTCGTGTTGTTGTCGGTGGTGATGATGATGTTGTTGAAGAGGTTGTGGTGGAAGATATGAAGCTGCCACTTCCCTCCTTTCGGAGATTGCTAGCACTGAATGTTCCCGAGTGGAAGCAAGCGTGCATGGGGTGTTTGAACGCAGTGTTGTTTGGCGCAATACAACCTGTGTATGCATTTTCAATGGGGTCCGTGATATCTGTTTATTTTCTCCCAGACCATGATGAGATAAAAGAGAAAACCAGGATCTACTCCCTTTGTTTTCTAGGGTTGGCCGTGTTCTCCTTGGTGGTTAACATCCTCCAACACTATAACTTTGCGTACATGGGAGAGTACTTGACCAAAAGGATCAGAGAACGAATGCTCTCAAAGATTCTCACTTTCGAAGTTGGATGGTTCGATCAAGATGAAAATTCCACTGGTGCTGTTTGTTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGGTCATTGGTGGGAGACAGAATGGCTCTGGTGGTGCAAACAATTTCTGCAGTGGTGATAGCTTTCACTATGGGCCTGGTCATTGCATGGAGGTTGGCCATTGTTATGATAGCAGTTCAACCGATCATCATAGTCTGCTTCTACACAAGGCGTGTTCTTCTGAAAAGCATGTCCAGCAAGGCCATCAAGGCGCAAGATGAGAGTAGCAAGATAGCTGCAGAAGCTGTTTCCAATCTCAGAACCATCACAGCATTTTCTTCCCAAGAGAGGATCCTAAAGATGCTTGAGAAGGCACAAGAGGGACCAAGTCACGAAAGCGTTCGGCAATCATGGTTTGCAGGGCTTGGTCTTGCATGTTCGCAGAGCCTTACATTTTGCACCTGGGCCTTAGATTTCTGGTATGGTGGAAAACTTGTGTTCAAAGGGCTCATCAGTGCCAAAGCATTGTTTGAGACCTTCATGATCTTGGTGAGTACAGGTAGAGTCATTGCAGATGCTGGAAGCATGACCAATGACCTAGCAAAAGGTGCTGATGCTGTTGGTTCAGTTTTTGCAATCCTAGATAGGTACACTAAAATCGAGCCTGATGATGAGATAGATGGGCACAAGGCTGAGAAATTAACAGGGAAAATAGAGCTTCATGATGTTCATTTTGCATACCCAGCAAGGCCTAATGTGATGATCTTTCAAGGCTTCTCGATCAGAATAGATGCAGGAAAATCAACAGCACTGGTAGGGCAAAGTGGGTCTGGAAAATCAACAATAATAGGGCTAATAGAGAGATTCTATGATCCTCTGAAAGGGACAGTGACCATAGATGGTAGAGACATAAAACAATACCACCTTAGGTCACTGAGGAAACACATTGGTCTGGTGAGTCAGGAGCCAACACTGTTTGGTGGGAGCATAAGGGAAAACATAGCATATGGAGCATGTGAGAAGGTTGATGAAAGTGAGATCATGGAAGCAGCAAGAGCTGCAAATGCTCATGAGTTCATTGCAAGTTTGAAAGATGGGTATGAAACATGGTGTGGAGATAGAGGAGTGCAACTCTCAGGGGGTCAAAAGCAAAGAATTGCAATAGCAAGAGCCATACTGAAGAACCCTATAGTGCTGTTGCTGGATGAAGCTACTAGTGCTCTTGATAGCCAATCAGAGAAACTGGTGCAAGATGCTCTAGACAGGGTGATGGTGGGAAGAACCAGTGTGGTGGTGGCTCACAGGTTAAGCACAATACAGAACTGTGATCAAATTGCTGTGCTAGAGAAGGGAAAAGTGGTGGAGAAAGGGACTCATTCATCTTTGTTGGGTGAGGGACCAAGTGGAGCTTATTACTCTTTGGTGAGTTTGCAGAGAAGACCAACAAAACATGAAGGTTAA 3843 0.4572 MGGGSGGSADNGDADHNNTSISMAAAKNKKSGSFSSIFMHADRLDVFLMIFGLIGAIGDGIGTPLVLFITSKIMNNIGNFSGGIDSTFIHGINKNAVVLLYLAGGSFVACFLEGYCWTRTGERQAARMRVRYLKAVLRQEVAYFDLHVSSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFVGSYIVGFALLWRLTLVGFPFVVLLVIPGFMYGRTLMGLASKIREEYNKAGTVAEQAISSIRTVYSFVGESKTIDAFSDALQGSVELGLRQGLAKGLAIGSNGVVFAIWAFISYYGSRLVMYHGAKGGTVFAVGAAIALGGLALGAGLSNVKYFSEASTAGERIMEVIKRVPKIDSDNMGGEILGEVRGEVEFENVSFVYPSRPDSVVLKEFSLRVPAGKTVALVGGSGSGKSTVISLLQRFYDPVEGEIRVDGVAIQRLQLKWLRSQMGLVSQEPALFATSIKENILFGREDASEEEVVEAAKASNAHNFISQLPQGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQSGKIMEMGSHHELIQNDNGLYTSLVRLQQAKHEKEDTPFHPLPPPPSSSSLLSSSSISNKDNNHSTSSRRLSLVSRSSSANSIPRVVVGGDDDVVEEVVVEDMKLPLPSFRRLLALNVPEWKQACMGCLNAVLFGAIQPVYAFSMGSVISVYFLPDHDEIKEKTRIYSLCFLGLAVFSLVVNILQHYNFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLVIAWRLAIVMIAVQPIIIVCFYTRRVLLKSMSSKAIKAQDESSKIAAEAVSNLRTITAFSSQERILKMLEKAQEGPSHESVRQSWFAGLGLACSQSLTFCTWALDFWYGGKLVFKGLISAKALFETFMILVSTGRVIADAGSMTNDLAKGADAVGSVFAILDRYTKIEPDDEIDGHKAEKLTGKIELHDVHFAYPARPNVMIFQGFSIRIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVTIDGRDIKQYHLRSLRKHIGLVSQEPTLFGGSIRENIAYGACEKVDESEIMEAARAANAHEFIASLKDGYETWCGDRGVQLSGGQKQRIAIARAILKNPIVLLLDEATSALDSQSEKLVQDALDRVMVGRTSVVVAHRLSTIQNCDQIAVLEKGKVVEKGTHSSLLGEGPSGAYYSLVSLQRRPTKHEG 1280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02521 1280 SMART AAA_5 1059 1232 IPR003593 GO:0016887
Viun4g02521 1280 SMART AAA_5 401 587 IPR003593 GO:0016887
Viun4g02521 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 612 IPR027417 -
Viun4g02521 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 339 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g02521 1280 Gene3D ABC transporter type 1, transmembrane domain 36 618 IPR036640 GO:0005524|GO:0016020
Viun4g02521 1280 ProSitePatterns ABC transporters family signature. 513 527 IPR017871 GO:0005524|GO:0016887
Viun4g02521 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1032 1269 IPR003439 GO:0005524
Viun4g02521 1280 CDD ABC_MTABC3_MDL1_MDL2 374 612 - -
Viun4g02521 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 374 610 IPR003439 GO:0005524
Viun4g02521 1280 SUPERFAMILY ABC transporter transmembrane region 45 358 IPR036640 GO:0005524|GO:0016020
Viun4g02521 1280 FunFam ABC transporter B family member 1 36 369 - -
Viun4g02521 1280 Pfam ABC transporter 392 541 IPR003439 GO:0005524
Viun4g02521 1280 CDD ABC_6TM_Pgp_ABCB1_D2_like 698 1014 - -
Viun4g02521 1280 ProSitePatterns ABC transporters family signature. 1172 1186 IPR017871 GO:0005524|GO:0016887
Viun4g02521 1280 Gene3D ABC transporter type 1, transmembrane domain 677 1019 IPR036640 GO:0005524|GO:0016020
Viun4g02521 1280 PANTHER ABC TRANSPORTER B FAMILY 18 764 IPR039421 -
Viun4g02521 1280 CDD ABC_MTABC3_MDL1_MDL2 1032 1272 - -
Viun4g02521 1280 MobiDBLite consensus disorder prediction 633 657 - -
Viun4g02521 1280 FunFam Putative ABC transporter B family member 8 673 1019 - -
Viun4g02521 1280 Gene3D - 364 613 IPR027417 -
Viun4g02521 1280 MobiDBLite consensus disorder prediction 616 657 - -
Viun4g02521 1280 SUPERFAMILY ABC transporter transmembrane region 692 1015 IPR036640 GO:0005524|GO:0016020
Viun4g02521 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1026 1272 IPR027417 -
Viun4g02521 1280 FunFam ABC transporter B family member 4 1022 1278 - -
Viun4g02521 1280 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 347 - -
Viun4g02521 1280 FunFam ABC transporter B family member 4 364 619 - -
Viun4g02521 1280 Pfam ABC transporter transmembrane region 710 978 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g02521 1280 Pfam ABC transporter transmembrane region 49 316 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g02521 1280 Gene3D - 1022 1279 IPR027417 -
Viun4g02521 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 715 996 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g02521 1280 Pfam ABC transporter 1052 1200 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02521 Viun-Chr4 40135537 40143744 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02521 33 1273 Calmodulin-binding Proteins AT2G36910 45.060 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02521 K05658 - gmx:100807709 2107.03