Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02509 ATGGCGACTCCAAGATTCCGATATGATGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGTCATGGTTTCACTGGCAATCTCTACAAAGCTCTTTGTAACAGGGGAATTCATACTTTCATCGATGATGAGGATCTTCAGAGAGGGGAGGAAATCACACCATCACTTCGAAAGGCAATTGAAGAGTCTAGGATTGCCATAGTTGTGCTCTCTCAAAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTCGCAACCATCCTTCACTGCCACACCCAAGGACACTTGGTTTTACCGGTCTTCTATAAGGTTCAACCTTCTGATGTCAGACACCAGAGAGGTAGTTATGGAGAAGAATTAACTAAACATCAGAGAAGGTTCAAAGATAAGGAAAAGTTGCAGAAATGGAAGATGGCTCTGCGTCAAGTAGCTGATTTGTCTGGCTATCATTTCAAAGACGCTGATGGATACGAATACAAGTTTATTGAGAGTGTTGTGGACCGGGTCTGCCACAAGATTAATCCTGCTCGTTTACATGTTGCGGATTACCCTGTTGGACTAGGGCCACAAGTGCTGGAACTAAAAAAGCTTCTAAACGTTGAATGTGGTGATGGATTCCACATGATAGGGATCCATGGAATGGGTGGCGTAGGAAAAACAACCCTCGCTTTAGCACTTTATAATTTGATTGCTGACTATTTTGATAGTTCTTGTTTTGTTCAAAACGTGAGAGAGAAATCAAAAAAGCATGGGCTGGAACACCTCCAAAGCATTATTCTTTCGAACCTACTTGGAGCGAAGGACATCAACTTAACAAGTGAGCATCAAGGGATTTCAATGATACAACTGTTGTTGCAACGAAAGAAGGTTCTGTTGATTCTTGATGACGTTGACAGGTGCGAGCAGTTACAGGCTCTGACGGGAAGCCCTGATTGGTTTGGTCCCGGCAGCAGAGTCATCATCACAACTAGAGATACACAACTGCTTGCATCTCATCAGGTCAAAGGAACATATGAGGTCGACACATTGGATGCAAAGGACGCTCTTCAATTGCTTACATGGAAAGCTTTCAAAACAGAACAGGTTGATCCAAGTTACATGGAGGTGTTGAATGATGTAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCAATCTGTTTGCAAAAAGTGTGGAACAGTGGAAATCTGCTATCAATCAATATAAAAGAATTCCTAACAATAAAATCCAAGAGATTCTTAAAGTAAGCTTCGATGCTTTAGAGGAAGAAGAGAAGTGTGTTTTTCTTGACATTGCTTGTTGCTTCGAAGGATATGAACTGACAAAGGTTGAGGTTATGCTTCGTGCTCTCTACGATGACTGCATGAAATATCATATTGGGGTGTTGGTTCAAAAATCTCTCATTAAGATTAATTACCCTGGTATAATTGTAATGCATGATTTAATTGGGGACATGGGTAAACAAATTGACCAGAGAGAATCATCGAAAAAGCCAGGAAAGGGCAGGAGATTATGGTTACCTAAAGATATAATTCAAGTTTTAATGGACAACACAGGAACTAGCGAAACTGAAATCCTATGCCTGGATTTGTCTATATCTGAGAAAGAAGAAACGCTAGAATGGAATGCCAACGCCTTCAGGAGGATGAAAAACCTTAAAATACTTATCATTAGAAATGGGAAATTTTCCAAAGGTCCCAATTATTTTCCAGAAAGTTTGAGAATACTGGAATGGCATGGATACCCTTCAAATTGTTTACCTTCAAATTCTCATCCAAACAAACTTGTGACATGCAAGTTGCCTAACAGTTCTTTTACGTCATTTGGGTTCAATGGTTCATCAAAGAAGTTCAAGAATTTAACCGAATTGAACTTTGACAATTGCAAAATTTTAACACGGATACCTGACGTATCTGATCTCCCAAATCTGGAGAAACTTTCCTTTGAACGGTGTGAGAGAGTAATTGCAGTTGACGACTCAATTGGTTTTTTGAATAAACTTAAAATATTGAAAGCTCAACACTGCACGAAGCTTAGGAGATTTCCACCTCTCAACTTGCCCTCTCTTAAAGTACTTCAACTTTCACATTGTTACAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGGAAACATAAGGGAACCTTTTTTGTTTAAAGTTGGCATAGAAGAGTTGCCAGTTTCATTTCAACATCTTACCGGACTCCATGAGTTATACGCGGAATGTGATTTTCTTCAGTTAAATAGCAGTGTCTTGACGTCTTCGTTGACTGGTTTTTTCGCTAATGGATGCAAGGAGTGGAAATGGATAAATTCAAAAGATGGTGAAGAAGTGGGCTCAAGGGTATCTTCAACTCTACGTTCGTTTGAGCAACTTCACGAGGCTGGAAAGACTGATTTTGTGCTTCCAGGAGGAAGTATTCCCGAGTGGTTGGATAAAGAAAGCTGGGGACCTTCAATTTCTTTCTGGTTTCGTAATCAATTCCCTCCCAAAGTCCTTTGTTTCTTTATTGCATCTGTACGGAATGATATCATTTATCACTTGGTTAGACCCGTGGTGTTAATCAATGGCAAAGTTCAAGGATATAAAGCTGGTTATTATATGCATGAGGTAATGGCGGAATTGGATCATATGCAGCTCTTTGATCTACATGTGTTACCGTTCTCTGAAGATCTGATGAAAATGGCTTCAGAAAAGGAGTGGAAGCATGTGGAGATTACATACCAAGGTTTGCTTATTAACTCATTCATCAAAGCAATGGGAATCCATATAGTCAAATCGGAAAGAAGGGGCATGGAGGACATTAGATATGATGATCCTAACACCACCACAAAAGTGTGGCCATGCAACTTCTCTGTAACTTTTCTTCCTTTCTTTTTTCGCTTTTTGTTTGCTCTCATTTTATTTTTGACATTGTTGATCCATTTGGATTTTGTAAATCTTTCATCACTTTGCGTTTTCAATCTCAGGTTTTAG 2991 0.3975 MATPRFRYDVFLSFRGEDTRHGFTGNLYKALCNRGIHTFIDDEDLQRGEEITPSLRKAIEESRIAIVVLSQNYASSSFCLDELATILHCHTQGHLVLPVFYKVQPSDVRHQRGSYGEELTKHQRRFKDKEKLQKWKMALRQVADLSGYHFKDADGYEYKFIESVVDRVCHKINPARLHVADYPVGLGPQVLELKKLLNVECGDGFHMIGIHGMGGVGKTTLALALYNLIADYFDSSCFVQNVREKSKKHGLEHLQSIILSNLLGAKDINLTSEHQGISMIQLLLQRKKVLLILDDVDRCEQLQALTGSPDWFGPGSRVIITTRDTQLLASHQVKGTYEVDTLDAKDALQLLTWKAFKTEQVDPSYMEVLNDVVTYASGLPLALEVIGSNLFAKSVEQWKSAINQYKRIPNNKIQEILKVSFDALEEEEKCVFLDIACCFEGYELTKVEVMLRALYDDCMKYHIGVLVQKSLIKINYPGIIVMHDLIGDMGKQIDQRESSKKPGKGRRLWLPKDIIQVLMDNTGTSETEILCLDLSISEKEETLEWNANAFRRMKNLKILIIRNGKFSKGPNYFPESLRILEWHGYPSNCLPSNSHPNKLVTCKLPNSSFTSFGFNGSSKKFKNLTELNFDNCKILTRIPDVSDLPNLEKLSFERCERVIAVDDSIGFLNKLKILKAQHCTKLRRFPPLNLPSLKVLQLSHCYSLENFPEILGKMGNIREPFLFKVGIEELPVSFQHLTGLHELYAECDFLQLNSSVLTSSLTGFFANGCKEWKWINSKDGEEVGSRVSSTLRSFEQLHEAGKTDFVLPGGSIPEWLDKESWGPSISFWFRNQFPPKVLCFFIASVRNDIIYHLVRPVVLINGKVQGYKAGYYMHEVMAELDHMQLFDLHVLPFSEDLMKMASEKEWKHVEITYQGLLINSFIKAMGIHIVKSERRGMEDIRYDDPNTTTKVWPCNFSVTFLPFFFRFLFALILFLTLLIHLDFVNLSSLCVFNLRF 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02509 996 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 737 IPR044974 GO:0006952
Viun4g02509 996 Gene3D Ribonuclease Inhibitor 689 762 IPR032675 -
Viun4g02509 996 Gene3D Ribonuclease Inhibitor 528 688 IPR032675 -
Viun4g02509 996 Gene3D - 3 180 IPR035897 -
Viun4g02509 996 SUPERFAMILY "Winged helix" DNA-binding domain 411 518 IPR036390 -
Viun4g02509 996 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 174 - -
Viun4g02509 996 Pfam NB-ARC domain 193 416 IPR002182 GO:0043531
Viun4g02509 996 Pfam TIR domain 8 173 IPR000157 GO:0007165
Viun4g02509 996 SUPERFAMILY L domain-like 544 773 - -
Viun4g02509 996 Gene3D - 341 425 IPR042197 -
Viun4g02509 996 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 148 IPR035897 -
Viun4g02509 996 SMART AAA_5 204 345 IPR003593 GO:0016887
Viun4g02509 996 Gene3D - 182 335 IPR027417 -
Viun4g02509 996 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Viun4g02509 996 SMART till_3 7 145 IPR000157 GO:0007165
Viun4g02509 996 PRINTS Disease resistance protein signature 207 222 - -
Viun4g02509 996 PRINTS Disease resistance protein signature 688 704 - -
Viun4g02509 996 PRINTS Disease resistance protein signature 376 390 - -
Viun4g02509 996 PRINTS Disease resistance protein signature 283 297 - -
Viun4g02509 996 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 435 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02509 Viun-Chr4 40034870 40039292 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02509 4 746 WRKY Transcription Factor Family AT4G12020 29.519 9.56e-79 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02509 - - gmx:100817425 1129.39