LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun4g02508	ATGGCAACTCCAAGTTCCCGTAGATTCACGTACGATGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGTTACGATTTCACAGGTAATCTGTACAAATCTCTGTGTGACAGGGGAATTCACACTTTCATCGATAATGAGGAGCTTCAGAGTGGAGAGAAAATCACAGCAGCACTTGTGAAGGCAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGCAGCCATCCTTGACTGCAAGAATAAAGGGCTACTTGTTATACCCGTATTTTATAAGGTGGACCCTTCATATGTGAGACACCAGAAAGGCAGTTATGGAGAAGCATTGACTAAGCGTCAGAGAAGGTTCGAAGATACACAGAAGGTGCAGAAATGGGAGGCAGCTCTGCGTCAAGTAGCTAACTTGTCTGGCGATCATTTCAAAGAAGGAGATGAGTACCAGTACGAGTTTATTGGGAGAATTATTGAACGGGTTTCCAGGGAAATTAATCGTGCTCCTTTACATGTTGCGGATTACCCAGTTGGCCTACTGTCACAGGTGCTGGAAGTCAAGGAACTTTTGGATGTTGGATCTGATGATGTTCACATGATAGGGATCCATGGAATGGGCGGGTTAGGAAAAACAACACTTTCTGTAGCAGTGTATAATTTGATTGCTGATGATTTTGACAGTTCATGCTTTCTTCAAAATGTAAGAGAAGAATCAAAGAAACATGGTTTAAAACACCTCCAGACCATCCTTCTTTCGAAAATACTTGGAGAGAAGGACATCAACTTAGCTAGTGAACATGAAGGAATTTCAATGATACAACAAAGGTTGCAGCGAAAGAAGGTTCTCTTGATTCTTGATGACGTTGACAAGTGGAAGCAGTTACAGGCACTTGCAGGAAGATCTGATTGGTTTGGCCCCGGCAGCAGAATTATCATTACCACTCGGGACCAACAACTGCTAAAATCTCATGAGATTGAAAGAACTTATGAGGTGGAAAAATTGAATAGGAATGATTCTCTTCAATTGCTTAAATGGAAAGCTTTCAAAAAGGAACAAGTTGATCCAAGTTACGTGGAGGTCTTGGATGATGTAGTAACATATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCAACCTGTTAGCAAAAAGTGTGGAAGAGTGGAAATCTGCTATCAATCAATATAAAAGAATTCCTAGCAATCAAATCCTAGAGATACTTAAAGTAAGCTTTGAGGATCTAGAGAGTGAAGAGAAGAGTGTTTTTCTTGACATAGCTTGTTGCTTCAAAGGATATATATTAAGAGAGGTAGAAGATATTCTTGGAGCTATTTATGATGACTGCATGAAACATCATATCAGTGTGTTGGTTGACAAATCTCTCATAAAGGTAAAGAATGATTGGTGGAGTAAAGTTGAAATACACGACCTGATTGAGGAAATGGGTAGACAAATTGACCGACAAGAATCACCTGAAGGGTCAGGGAAGCGCAGGAGAATATTGTTACCTAAAGATTTAATTCAAGTTTTAAAGGGGAACACAGGAACTAGCATTATTGAGATCCTAAGTCTTGATATCTCGATATACATGGGAAAAGAAACACTGGATTGGAATGCATTTGGAAATATGAAAAACCTAAAAGTACTTATTATTAGAAATTTCGGAATTTCTGGAGGTCCCAATTGTTTTCCAGAAAGTTTGAGAGTACTGAAATGGGATGGATACCCTTCAAATTGTTTTCCATCAAATTTTGACCCGAACAAACTTCTGATATGCAAGTTAGCATTTGGTCGTTTTACGTCATTTAAATTCCCTGACTCATCAAAGAAGTTCGAGAATCTAACCGAATTGAATTTTGACGACTGCAATCTTTTAGAACAGATACCTGACGTATCTGATCTGCCAAACTTGGAGAAGCTTTCATTTCAATGGTGTGGGAGTTTAGTTTCAGTTCACAACTCAGTTGGTTTTCTGACTAAACTCAAAATACTAATAGCTGAAAGATGCGAGAAGCTAAGGAGATTTCCGCCTCTCAACTTGACTTCTCTTGAAACACTAGAACTTTCGCATTGTTTAAGTCTTGAGAATTTTCCAGAAATATTGGGAAAGATGGGAAACATAAGGAAACTTAGTTTGCGTAGACTTCCCATCAAAGAATTACCAGATTCATTTCAAAATCTTACTGGACTGCAAGAGTTAGAATTGAACTGTGATTTTATTCAGTTAAGTGGCAATGTCTTGACGCCCGAACTGACTAGCCTCTGCGTTGTTACTTTCAAGGAGTGGAAATGGGTAAAATCAAAAGAGGGTGAAGAAGATGTGGGCTCAACAGTATCTTCAAATGTACAATCATTTTGGGGTTCTTACAACCTGGATGATGATTTTTTTTCAGCAGTTTTCCCTCAGTTGGCTCAAGTAAAACAGTTGTGGCTGGTTAGAAGTAATGTCTCATTCCTTCCTGAATGCATGAAAGAATTCCACCACCTGAATGATCTTGGTGTGAGTTTTTGCAAGTATCTAAAGGAAATCAGAGGGATTCCACCAAACTTGAGAAAGTTCAGGGCAGTAGAGTGTAGATCATTGACTTCCTCGAGTTCAAGCATTCTGTTAAATAAGCAACTTCATGAGGCTGGAAAGACTGATTTTATCTTTCAAGGAGGAAGTATCCCAAGCTGGTTCGATAAACAAAGTCGGGGACCTTCAATTTCTTTCTGGTTTCGTAATAAATTTCCCGCCAAAGTTGTTAGTCTTGTTATTTTAGCTTTACAGCGGCCTCAATTTGCGGAAACAGTTAGACCCATGGTGTTAATCAACGGCGAATATCGAGGCTCTTATGATTATAGTTATTATTTGAAGAGAGAAGAGGGGATTGTGGAATTGGATCATGTGTACCTCTTTGATCTACGAGTGACACCTTTTCGTGATGATCTGACGGAAATGCCTTTAGAAGAAGAGTGGAAGCATGTGGAGGTTACGTACGAAGGTATGTATGATACCTCACTCATCAAAGCAATGGGAATCCATGTAGTCAAAACGGAAAGGACGAGCATGGAGGATATTAGATATGATATTCCTTTTTAG	3117	0.3962	MATPSSRRFTYDVFLSFRGEDTRYDFTGNLYKSLCDRGIHTFIDNEELQSGEKITAALVKAIEESRIAIVVLSHNYASSSFCLDELAAILDCKNKGLLVIPVFYKVDPSYVRHQKGSYGEALTKRQRRFEDTQKVQKWEAALRQVANLSGDHFKEGDEYQYEFIGRIIERVSREINRAPLHVADYPVGLLSQVLEVKELLDVGSDDVHMIGIHGMGGLGKTTLSVAVYNLIADDFDSSCFLQNVREESKKHGLKHLQTILLSKILGEKDINLASEHEGISMIQQRLQRKKVLLILDDVDKWKQLQALAGRSDWFGPGSRIIITTRDQQLLKSHEIERTYEVEKLNRNDSLQLLKWKAFKKEQVDPSYVEVLDDVVTYASGLPLALEVIGSNLLAKSVEEWKSAINQYKRIPSNQILEILKVSFEDLESEEKSVFLDIACCFKGYILREVEDILGAIYDDCMKHHISVLVDKSLIKVKNDWWSKVEIHDLIEEMGRQIDRQESPEGSGKRRRILLPKDLIQVLKGNTGTSIIEILSLDISIYMGKETLDWNAFGNMKNLKVLIIRNFGISGGPNCFPESLRVLKWDGYPSNCFPSNFDPNKLLICKLAFGRFTSFKFPDSSKKFENLTELNFDDCNLLEQIPDVSDLPNLEKLSFQWCGSLVSVHNSVGFLTKLKILIAERCEKLRRFPPLNLTSLETLELSHCLSLENFPEILGKMGNIRKLSLRRLPIKELPDSFQNLTGLQELELNCDFIQLSGNVLTPELTSLCVVTFKEWKWVKSKEGEEDVGSTVSSNVQSFWGSYNLDDDFFSAVFPQLAQVKQLWLVRSNVSFLPECMKEFHHLNDLGVSFCKYLKEIRGIPPNLRKFRAVECRSLTSSSSSILLNKQLHEAGKTDFIFQGGSIPSWFDKQSRGPSISFWFRNKFPAKVVSLVILALQRPQFAETVRPMVLINGEYRGSYDYSYYLKREEGIVELDHVYLFDLRVTPFRDDLTEMPLEEEWKHVEVTYEGMYDTSLIKAMGIHVVKTERTSMEDIRYDIPF	1038

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun4g02508	1038	SUPERFAMILY	"Winged helix" DNA-binding domain	414	523	IPR036390	-
	Viun4g02508	1038	Gene3D	-	187	339	IPR027417	-
	Viun4g02508	1038	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	150	IPR035897	-
	Viun4g02508	1038	ProSiteProfiles	TIR domain profile.	9	175	IPR000157	GO:0007165
	Viun4g02508	1038	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	11	855	IPR044974	GO:0006952
	Viun4g02508	1038	FunFam	Disease resistance protein (TIR-NBS-LRR class)	7	177	-	-
	Viun4g02508	1038	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	176	437	IPR027417	-
	Viun4g02508	1038	Gene3D	-	343	427	IPR042197	-
	Viun4g02508	1038	Pfam	NB-ARC domain	195	418	IPR002182	GO:0043531
	Viun4g02508	1038	Pfam	TIR domain	11	172	IPR000157	GO:0007165
	Viun4g02508	1038	Gene3D	-	5	183	IPR035897	-
	Viun4g02508	1038	Gene3D	Ribonuclease Inhibitor	532	716	IPR032675	-
	Viun4g02508	1038	SUPERFAMILY	L domain-like	546	881	-	-
	Viun4g02508	1038	Gene3D	Ribonuclease Inhibitor	718	889	IPR032675	-
	Viun4g02508	1038	SMART	till_3	10	148	IPR000157	GO:0007165
	Viun4g02508	1038	PRINTS	Disease resistance protein signature	690	706	-	-
	Viun4g02508	1038	PRINTS	Disease resistance protein signature	285	299	-	-
	Viun4g02508	1038	PRINTS	Disease resistance protein signature	209	224	-	-
	Viun4g02508	1038	PRINTS	Disease resistance protein signature	378	392	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun4g02508	Viun-Chr4	40025152	40029200	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun4g02508	11	747	WRKY Transcription Factor Family	AT4G12020	29.815	2.96e-71	258

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun4g02508	-		-	var:108344036	1348.57