Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02507 ATGGCTTTGCGATCATGTTCCTCTTCCTTCATCTATGAGGTGTTTCTCAGTTTCAGAGGGGAAGACACACGTCACGGTTTCACTGGCAATCTCTACAAAGCCCTTGATGACAAGGGAATCCACACTTTCATTGATGATGAGGAGCTTCAGAGCGGAGAGGAAATAACACCTGCACTTTTGAATGCAATTGAAGAGTCCAGGATTGGCATCACTGTGCTCTCTAAAGACTATGCTTCATCATCATTTTGCTTAGATGAACTTACAACCATCCTTGAATGCAGGATGAAAGGGCTTTTGGTTATACCAGTCTTTTATATGGTGGACCCTTCAGATGTAAGACAACAGAAAAGTACTTATGGGGAAGCATTGGCTAAGCATCAGAAAAGATTCAAACCTGAAAAGTTGCAGAAATGGAAGATGGCTCTCCGTCAAGTGGCTGATCTCTCAGGCTATCATTTCAAACATGGAAATGAATATGAACACGAGTTTATTGGGAGGATTGTTGAGCGGGTCTCTAGGGAGATTAACAGTGTTCATTTACCTGTTGATGATTATGTAGTTGGACTGGAGTCAAAAGTCCAAGAGGTAAAGAAGCTTTTGGATTTAGGATCTCATGATGGTGTTGTGATAGGGATCCATGGAATGGGTGGGATAGGAAAAACAACACTTGCTCTAGCAGTTCATAATTTGATTGCTGAAAATTTTAAAGAATCATATTTTCTTCAAGATGTTAGAGAAGAATCAGACAAAAATGGGCTAAAGCACCTCCAAAGCATTCTTCTTTCAAAAATGTTTAGAGAGAAGAATATCATCTTAACAAGTTGGCAAGAAGGAGCATCAATGATACAGCAGAGGCTGAGGCGAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAAGCTTGAGCAATTAAATGCATTTGTTGGCAGATCAAATTGGTTTGGTCCCGGCAGCAGAGTCATCATTACCACTCGGGACCAACATCTTCTGACATCTTATGACGTTAAAAGAACTTATGAGGTGAAAAAATTGAAGAATTATGATGCTCTTCAGTTACTAACATGGAAAACTTTTAAAACGGGAATGGCTGATCCAAGTTATGAAGAGGTCTTGCATCGTGCAGTAACTTATGCTTCAGGCCTTCCATTGGCCTTGGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTAGAAGAATGGGAGTCTGCTATTGAGCATTACAAAAGAATTCCTAGTGATGAAATCCTAAAGATACTTAAAGTAAGCTTTGATACTTTGGGTAGAGAAGAGAAGAATGTTTTTCTTGACATAGCTTGTTGCTTGAAAGGATGTAAATTGGCAGAGATTGAGCATATGTTTCGTGCTCTTTATGATGACAGCATGAAATATCATATTGGTGTGTTGGTTGAAAAATCTCTCATAAAGATTAGTCAGCGTAGAACGGTTGAAATGCACGACTTGATTCAGGACATGAGTAGAAGAATTGAGCAGCAAGAATCACCTAAAGAGCCAGGAAAATGCAAGAGACTATGGTTACCAAAAGATATAATTCAAGTTTTAAAATACAACACGGGAACTTGGAAAATTGAGATCATATGTCTAGATATCTCCATATCTGAGAGAGAAGAAACGATATACTGGAATGGAAATGCCTTCAGAAAGATGAAAAACCTTAAAATACTTATCATAAGAAATGGTAAATTTTCCGAAGGTCCCAATTATTTTCCAGAGAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCAAATTTTGATACGACCAAACTTGTGATATGCAAGTTACCTCACAATCCTTTTACGTCATTTAGGTTCCATGGTTCATCAAAGAACTTCAATCTAACCGTCTTGAATTTTGACAAGTGCAATTATTTAACACAGATACCAAACTTGTCTGATCTATTAAATTTGGAAGTACTTTCATTTGAAAAGTGTACGAGTTTACTAGCAGTTCACGACTCAATTGGTTTTCTAAATAAACTCAAAATATTGAAAGCTGAAGGTTGCACCAAGCTCAGTAGATTTCCACCTCTCAACTTGACCTCTCTTGAAGAACTTGAACTTTCATACTGTTCAAGTCTGGAAAATTTTCCAGAAATATTAGGAAAGATGGGAAACATAAGGGAACTTAGTTTGTTTGAACTTCCCATAAAAGAATTGCCAGTTTCATTTCATAATCTTATTGGACTCCAAGAGTTAGCGATACAGTGTGATTTTGTTCAGTTAGGCAGCATTGCCTTGACGCCCGAACTGCCTGATTTTAGAGTATATAAAGGTAAAGGATGGCAATGGGTAAAATCAGAAGAGGGTGAAGAAAAAGTGGGTTCAATGGTATCTCCAAAGATGCATAAGTTTTGGGTTTTATCTTGCAACTTGAATGATGATTTTTTTTCAGCATGTTTCAAGCAGTTAGCTCAAGTGAGTGATTTACGGCTAAGGGAAAGTAATGTCACATTCCTTCCGGAATGCATCAAAGAATTTCACAGCCTATCTTCTCTCGATGTGAATGATTGCAAGCATCTTCAGGAAATTAGAGGGGTTCCACCAAATTTGAAATATTTCAGGGCAATAAACTGTATATCCTTGACTTCCACGGGTTCAAGCATGCTGTTAAATCAGCATCTTCACGAGGCTGGAGGAACTGACTTTATCTTCCCAGGAGGAACTATTCCAGAGTGGTTCCATAAACAAAGGAAGGGAACTTCAATTTCTTTCTGGTTTCGTAAGAAATTCCCTGCCAAAGTTCTTTGTCTTCTTATTGCACCTGTACTGGGTGATAACATAATAGGATTGGTTAGACACATGATGTTGATCAATGGAAAAGTTAAAAAACAATATTTGCTACATTATCTGAATAGAGAAGTGAAGAAGATGGAGTTGGATTATACACATCTCTTTGATCTACGACAATCACATTTCTCCCCTGATGATGATCTGATGGAGGAAGTGTCTTTAGAAAAGGAATGGAATCATGTGGAGATCACATATGAAGGCTTGATACAGAGCTCCCTTATTAAGATAATCGGAATCCATGTTGTGAAAGAGGAAAACAGCAGCATGGAGGACATTCGATATGATGATCCTTACGCAATCACAAAACCATTTATCATAAAATACACAGCTTTAATGTTGACATTCATATTTTTTACTGGTTCTTTTCTGTTGTTCTCTTACTTTTAA 3213 0.3775 MALRSCSSSFIYEVFLSFRGEDTRHGFTGNLYKALDDKGIHTFIDDEELQSGEEITPALLNAIEESRIGITVLSKDYASSSFCLDELTTILECRMKGLLVIPVFYMVDPSDVRQQKSTYGEALAKHQKRFKPEKLQKWKMALRQVADLSGYHFKHGNEYEHEFIGRIVERVSREINSVHLPVDDYVVGLESKVQEVKKLLDLGSHDGVVIGIHGMGGIGKTTLALAVHNLIAENFKESYFLQDVREESDKNGLKHLQSILLSKMFREKNIILTSWQEGASMIQQRLRRKKVLLILDDVDKLEQLNAFVGRSNWFGPGSRVIITTRDQHLLTSYDVKRTYEVKKLKNYDALQLLTWKTFKTGMADPSYEEVLHRAVTYASGLPLALEVIGSNLVGKSVEEWESAIEHYKRIPSDEILKILKVSFDTLGREEKNVFLDIACCLKGCKLAEIEHMFRALYDDSMKYHIGVLVEKSLIKISQRRTVEMHDLIQDMSRRIEQQESPKEPGKCKRLWLPKDIIQVLKYNTGTWKIEIICLDISISEREETIYWNGNAFRKMKNLKILIIRNGKFSEGPNYFPESLRVLEWHGYPSNCLPSNFDTTKLVICKLPHNPFTSFRFHGSSKNFNLTVLNFDKCNYLTQIPNLSDLLNLEVLSFEKCTSLLAVHDSIGFLNKLKILKAEGCTKLSRFPPLNLTSLEELELSYCSSLENFPEILGKMGNIRELSLFELPIKELPVSFHNLIGLQELAIQCDFVQLGSIALTPELPDFRVYKGKGWQWVKSEEGEEKVGSMVSPKMHKFWVLSCNLNDDFFSACFKQLAQVSDLRLRESNVTFLPECIKEFHSLSSLDVNDCKHLQEIRGVPPNLKYFRAINCISLTSTGSSMLLNQHLHEAGGTDFIFPGGTIPEWFHKQRKGTSISFWFRKKFPAKVLCLLIAPVLGDNIIGLVRHMMLINGKVKKQYLLHYLNREVKKMELDYTHLFDLRQSHFSPDDDLMEEVSLEKEWNHVEITYEGLIQSSLIKIIGIHVVKEENSSMEDIRYDDPYAITKPFIIKYTALMLTFIFFTGSFLLFSYF 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02507 1070 ProSiteProfiles TIR domain profile. 10 175 IPR000157 GO:0007165
Viun4g02507 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 437 IPR027417 -
Viun4g02507 1070 SMART till_3 11 148 IPR000157 GO:0007165
Viun4g02507 1070 SMART AAA_5 206 344 IPR003593 GO:0016887
Viun4g02507 1070 Gene3D Ribonuclease Inhibitor 512 766 IPR032675 -
Viun4g02507 1070 Gene3D Ribonuclease Inhibitor 783 905 IPR032675 -
Viun4g02507 1070 Gene3D - 5 178 IPR035897 -
Viun4g02507 1070 PRINTS Disease resistance protein signature 689 705 - -
Viun4g02507 1070 PRINTS Disease resistance protein signature 209 224 - -
Viun4g02507 1070 PRINTS Disease resistance protein signature 285 299 - -
Viun4g02507 1070 PRINTS Disease resistance protein signature 378 392 - -
Viun4g02507 1070 Pfam NB-ARC domain 190 409 IPR002182 GO:0043531
Viun4g02507 1070 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Viun4g02507 1070 SUPERFAMILY L domain-like 543 879 - -
Viun4g02507 1070 SUPERFAMILY "Winged helix" DNA-binding domain 413 521 IPR036390 -
Viun4g02507 1070 Gene3D - 343 427 IPR042197 -
Viun4g02507 1070 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 858 IPR044974 GO:0006952
Viun4g02507 1070 Gene3D - 179 341 IPR027417 -
Viun4g02507 1070 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 177 - -
Viun4g02507 1070 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 151 IPR035897 -
Viun4g02507 1070 Pfam TIR domain 12 175 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02507 Viun-Chr4 40020810 40024753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02507 7 747 WRKY Transcription Factor Family AT4G12020 30.537 1.52e-77 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02507 - - gmx:106794133 1337.78