Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02497 ATGGAGTGTCGAGTGCAAAAAGTGAAGTCACTTCTTCAATTTGGATCTGATTCTGGAGTCCACATTGTAGGGATATATGGAATAGGCGGAATGGGGAAGACAACACTAGCTCGAGCAGTTTACAATTCCATTGCAGACCAATTTGAAGGTTTATGTTTTCTTGATGGTGTGAGAGAAAACGCTGTTAAACACGGGTTAGTACATCTCCAAGAGATGCTTCTTTCTGAAATAGTTGGAGAGAAGGATATTAAGATAGGAAGTGTAAGTAAAGGAATTTCAATAATAAAGCATAGGCTCCACCGAAAGAAGGTTCTTTTGATTCTTGACGATGTTGACAAACTAGAACAAGTGCGAGCAACTGTTGGAGTGCCTAATTGGTTTGGTTCTGGAAGTAGAGTCATCATAACAACTAGGGACAAACATCTGCTTCAGGGAGTTGATGGAAAATATGAGATAGAGGATTTAAACGAGGAAGAAGCACTTGAATTGCTTAGTTGGAATGCTTTTAAAGATGACAAAGTTGATCCAAGTTACAAGGACATTTCAAACCAAGCAGTGGCTTATGCTTCTGGCCTTCCACTAGCTTTGGAAGTAATAGGTTCCTTGTTGTTTGGAAAAGGCATAAGAGAATGGGAATCTGCATTAGATCAGTTCAAGAAAATCCCTAACAAAAGGATCCAAGAAATACTTAAGGTGAGCTACAATGCTTTAGAGGAGAATCAACAGAGAATTTTTCTTGACATCGCTTGCTGCTTGAAAGGATATGAATTTGAAGAGGTTGAAGATATTCTTGGTGCTCATTATGGTGTTTGCATGAAATATGACATAGGAGTGTTGGTGGATAAATCTCTCATAAAAATTAAGAATGGCTGTGTGACACTTCATGAATTGATAGAGGTTATGGGCAAGGAAATTGATCGCCAAGAATCACCCAAAGAGCTTGGGAAACGCAGGAGGTTATGGTTCCATAAAGATATAATTCAAGTTTTAGCAGAAAATACAGGGACCAGTGAGATTGAAATCATCTGTTTTGATTTCCCCTTATTTGAAGAAGATGAAGAAGTATTTGTAGAATGGGATGGAGGGGCCTTTAAGAAGATGAAAAACCTGAAAACACTAATTATTAGAAACTCTCATTTTTCAAAAGGTCCAGCATATCTTCCAAATAGTTTAAGAGTATTAGAATGGTGGACATATCCATTACAGGATTTACCAACTGATTTTCATCCGAACAAACTTGCCATATGCAAATTACCCAGAAGTTGCTTTACATCACTTGAGTTAGCAACCATATCAAAGAAGTTCATGAATCTGACAGTTCTGAAATTTGATGGGACTGAATGTTTGACGAAAATACCTGACATATCCAGCCTCCAAAATCTAGAAAAACTGACATTTGAGTGTTGTGAGAATTTAGTAGCAATTCATGATTCTGTGGGTTTTCTTGATAAACTTAAAATCTTGAGTGCTTTTGGGTGCAGCAAGCTTACGAGTTTTCCACCCATCAAGTTGATCTCTCTTGAACAACTGGATCTTTCATCATGTTCAAGTCTTGAGAGTTTTCCGGAAATATTAGGAAAGATGGAAAACATAACACAGCTAGAGTTGAAGTACACTCCCTTAAAAGAATTCCCATTTTCATTTAGAAATCTTGCTCGACTTCAAGATTTGGTGCTGGTTGACTGCGGAAATGTTCAGTTGCCGAGTAGCATTGTCATGTTGTCAGAACTGGCTGAGATTTTCGCCCTTGGGTGTAAAGGGTGGCTATTGCCAAAACAAGATGAGAATGATGAACAAAAAGTAAGCTTAGTGTCTTCAAATGTAAAATGTCTTTGTCTCTCGGGCTGCAATCTATCAGATGAATACTTTCCCATGGTTTTAGCATGGTTTGGTAATGTGAAAGAGTTAGAGCTATCAAGCAATAGCTTCACATTTCTTCCAGAATGCATCAAACAGTGTCGCTCTTTAAAATTACTTAACTTGGATAACTGTGAGCATCTTCGAGAAATTAGAGGGACTCCACCAAATTTAGAATATTTCTCTGCTGGAAATTGCAAATCCTTGAGTTTCTGTTGTTCAGCCATGCTATTGGACCAGGAACTGCATGAGGCTGGAAACACCATGTTTTGTTTGCCAGGATCTTGGATTCCAGAATGGTTAGAGCAACAAAGTATAGGTCCATCACTATCTTTCTGGTTTCGTGAGAAATTCCCTGTCATGGATCTGTGTTTTGTTATTGGGCCAATGGGTACTGACTCTATATTGTTTAGACCAATCATGACCATCAATGGCAACACAATGGAGATAAACTCCTTAACTGATAAGAGATTTTGTTTCGATTTCCCGGCATCGGATTATCATATACTCATCATTGGTACAAAGTACATGAAGTTTGGAGATAATCTGGATAAACCACTCTCAAAAAACGAATGGAATCATGTGGTGGTTTCCATTGCTCTTGATTTTGAACCAACCCCTAAAGAGATAATTGTCAAGCAAACTGCACTCCATGTAATCAAACCAGAAAGTAGCATGGATGATATCCAATTCACCGATCCTTGTAATCAACCTTCCTTCAAAGAGAAGCAAAGATTGGTTGACACTGTTGATTGTCACAGACAATTTATGCAGCAGCAAACCACTTTGGTTTCATTGGAACCACTTTCAATGAATCCACCTCAAGCATGCAAAAATAATCTGAATTGGGATTCATTTTCAACTGGAACAAGTAGCATTGCCAGTGTCCAGGAATATGAAATTGCATCACAGAAGTTACGTTTGGACATGGGGATTTTGCAATTTGTGCAGCAGCGGAAAAGATTGGCTATTTTGGGTTTACTGCAACAACGACGCACGGCTTCATTGGATTTACTGCAACGAAGGGGCAGAGAATTGCTTTCTTTGCTTTCTTCTCCATCATTGGAGTTGATGGTCTCATGGGAGAGGAGATGCATCACCAGTGTCCAAGGCTTGCAGGAGCAACATTTACCTTCCACCATCAAACAAAACTTTGAAGGTTGTAATGGCATCAATGATGCCAAAGTGAATGAAGTCATAAGATGCAACAACAATTCTGGAAATGATAATGAGAGAACCCCATTAATGGAAGAGCTACTAATGACAAAGGAGAATGATGTTCACAGCAAGAGATACCAACATGTCGGGAAAATGGCTTCGGATCCAATGGAATTAGAATATCTTTTACACATTCAGAAGATCAATTTCTCTCAAAGATAA 3237 0.3865 MECRVQKVKSLLQFGSDSGVHIVGIYGIGGMGKTTLARAVYNSIADQFEGLCFLDGVRENAVKHGLVHLQEMLLSEIVGEKDIKIGSVSKGISIIKHRLHRKKVLLILDDVDKLEQVRATVGVPNWFGSGSRVIITTRDKHLLQGVDGKYEIEDLNEEEALELLSWNAFKDDKVDPSYKDISNQAVAYASGLPLALEVIGSLLFGKGIREWESALDQFKKIPNKRIQEILKVSYNALEENQQRIFLDIACCLKGYEFEEVEDILGAHYGVCMKYDIGVLVDKSLIKIKNGCVTLHELIEVMGKEIDRQESPKELGKRRRLWFHKDIIQVLAENTGTSEIEIICFDFPLFEEDEEVFVEWDGGAFKKMKNLKTLIIRNSHFSKGPAYLPNSLRVLEWWTYPLQDLPTDFHPNKLAICKLPRSCFTSLELATISKKFMNLTVLKFDGTECLTKIPDISSLQNLEKLTFECCENLVAIHDSVGFLDKLKILSAFGCSKLTSFPPIKLISLEQLDLSSCSSLESFPEILGKMENITQLELKYTPLKEFPFSFRNLARLQDLVLVDCGNVQLPSSIVMLSELAEIFALGCKGWLLPKQDENDEQKVSLVSSNVKCLCLSGCNLSDEYFPMVLAWFGNVKELELSSNSFTFLPECIKQCRSLKLLNLDNCEHLREIRGTPPNLEYFSAGNCKSLSFCCSAMLLDQELHEAGNTMFCLPGSWIPEWLEQQSIGPSLSFWFREKFPVMDLCFVIGPMGTDSILFRPIMTINGNTMEINSLTDKRFCFDFPASDYHILIIGTKYMKFGDNLDKPLSKNEWNHVVVSIALDFEPTPKEIIVKQTALHVIKPESSMDDIQFTDPCNQPSFKEKQRLVDTVDCHRQFMQQQTTLVSLEPLSMNPPQACKNNLNWDSFSTGTSSIASVQEYEIASQKLRLDMGILQFVQQRKRLAILGLLQQRRTASLDLLQRRGRELLSLLSSPSLELMVSWERRCITSVQGLQEQHLPSTIKQNFEGCNGINDAKVNEVIRCNNNSGNDNERTPLMEELLMTKENDVHSKRYQHVGKMASDPMELEYLLHIQKINFSQR 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02497 1078 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 681 IPR044974 GO:0006952
Viun4g02497 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 248 IPR027417 -
Viun4g02497 1078 SUPERFAMILY "Winged helix" DNA-binding domain 225 330 IPR036390 -
Viun4g02497 1078 Gene3D Ribonuclease Inhibitor 522 704 IPR032675 -
Viun4g02497 1078 Gene3D Ribonuclease Inhibitor 361 521 IPR032675 -
Viun4g02497 1078 Pfam NB-ARC domain 4 240 IPR002182 GO:0043531
Viun4g02497 1078 SMART AAA_5 19 158 IPR003593 GO:0016887
Viun4g02497 1078 SUPERFAMILY L domain-like 357 711 - -
Viun4g02497 1078 Gene3D - 1 152 IPR027417 -
Viun4g02497 1078 Gene3D - 154 238 IPR042197 -
Viun4g02497 1078 PRINTS Disease resistance protein signature 502 518 - -
Viun4g02497 1078 PRINTS Disease resistance protein signature 98 112 - -
Viun4g02497 1078 PRINTS Disease resistance protein signature 22 37 - -
Viun4g02497 1078 PRINTS Disease resistance protein signature 189 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02497 Viun-Chr4 39974011 39979696 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02497 1 585 WRKY Transcription Factor Family AT4G12020 33.993 3.42e-71 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02497 - - var:108344624 1959.11