Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02496 ATGTCATCATCCTTCAGCTACGATGTGTTCCTCAGCTTCAGAGGCTCTGATACTCGCTACGGTTTCACTGGCAATCTCTACAAAGCTCTTTGTGACAAGGGAATCCATGCCTTCATTGATGATGAGGAGCTTCAAAGAGGGGATGAAATCGGAGAAGCACTTATCGAAGCCATTAAACAGTCTAGGATGGCCATAGTTGTGTTCTCCAAGAACTATGCATCTTCTTCCTTTTGCTTAGATGAACTTGTCAAAATCATTGACTGTGTTAAGGAAAAGAGTCGTTTACTTTTGCCCATTTTCTACGACGTCCACCCTTCGCATGTTCGAGGCCAGTCTGGGAGTTATGCAGAAGCTTTGGCCATGCACCAGGAAAGGTTCAAAAGCAGCAACCAAAGCCTCAATGATAACATGGGCAGGTTGCAAAAATGGAAGATGGCTCTTAACCAAGCAGCTTGTCTGTCCGGCAAGCATTACAAACTTGGAAATGAATATGAACACGAGTTTATAGGGAAGATAGTTAAAGAGGTCTCCAACAAGATAAACCGCAGACCTTTGCATGTTGCAGATTACCCCGTTGGGATGGAGTGTCGAGTGCAAAAAGTGAAGTCACTTCTTCAATTTGGATCTGATTCTGGAGTCCACATTGTAGGGATATATGGAATAGGCGGAATGGGGAAGACAACACTAGCTCGAGCAGTTTACAATTCCATTGCAGACCAATTTGAAGGTTTATGTTTTCTTGATGGTGTGAGAGAAAACGCTGTTAAACACGGGTTAGTACATCTCCAAGAGATGCTTCTTTCTGAAATAGTTGGAGAGAAGGATATTAAGATAGGAAGTGTAAGTAAAGGAATTTCAATAATAAAGCATAGGCTCCACCGAAAGAAGGTTCTTTTGATTCTTGACGATGTTGACAAACTAGAACAAGTGCGAGCAACTGTTGGAGTGCCTAATTGGTTTGGTTCTGGAAGTAGAGTCATCATAACAACTAGGGACAAACATCTGCTTCAGGGAGTTGATGGAAAATATGAGATAGAGGATTTAAACGAGGAAGAAGCACTTGAATTGCTTAGTTGGAATGCTTTTAAAGATGACAAAGTTGATCCAAGTTACAAGGACATTTCAAACCAAGCAGTGGCTTATGCTTCTGGCCTTCCACTAGCTTTGGAAGTAATAGGTTCCTTGTTGTTTGGAAAAGGCATAAGAGAATGGGAATCTGCATTAGATCAGTTCAAGAAAATCCCTAACAAAAGGATCCAAGAAATACTTAAGGTGAGCTACAATGCTTTAGAGGAGAATCAACAGAGAATTTTTCTTGACATCGCTTGCTGCTTGAAAGGATATGAATTTGAAGAGGTTGAAGATATTCTTGGTGCTCATTATGGTGTTTGCATGAAATATGACATAGGAGTGTTGGTGGATAAATCTCTCATAAAAATTAAGAATGGCTGTGTGACACTTCATGAATTGATAGAGGTTATGGGCAAGGAAATTGATCGCCAAGAATCACCCAAAGAGCTTGGGAAACGCAGGAGGTTATGGTTCCATAAAGATATAATTCAAGTTTTAGCAGAAAATACAGGGACCAGTGAGATTGAAATCATCTGTTTTGATTTCCCCTTATTTGAAGAAGATGAAGAAGTATTTGTAGAATGGGATGGAGGGGCCTTTAAGAAGATGAAAAACCTGAAAACACTAATTATTAGAAACTCTCATTTTTCAAAAGGTCCAGCATATCTTCCAAATAGTTTAAGAGTATTAGAATGGTGGACATATCCATTACAGGATTTACCAACTGATTTTCATCCGAACAAACTTGCCATATGCAAATTACCCAGAAGTTGCTTTACATCACTTGAGTTAGCAACCATATCAAAGAAGTTCATGAATCTGACAGTTCTGAAATTTGATGGGACTGAATGTTTGACGAAAATACCTGACATATCCAGCCTCCAAAATCTAGAAAAACTGACATTTGAGTGTTGTGAGAATTTAGTAGCAATTCATGATTCTGTGGGTTTTCTTGATAAACTTAAAATCTTGAGTGCTTTTGGGTGCAGCAAGCTTACGAGTTTTCCACCCATCAAGTTGATCTCTCTTGAACAACTGGATCTTTCATCATGTTCAAGTCTTGAGAGTTTTCCGGAAATATTAGGAAAGATGGAAAACATAACACAGCTAGAGTTGAAGTACACTCCCTTAAAAGAATTCCCATTTTCATTTAGAAATCTTGCTCGACTTCAAGATTTGGTGCTGGTTGACTGCGGAAATGTTCAGTTGCCGAGTAGCATTGTCATGTTGTCAGAACTGGCTGAGATTTTCGCCCTTGGGTGTAAAGGGTGGCTATTGCCAAAACAAGATGAGAATGATGAACAAAAAGTAAGCTTAGTGTCTTCAAATGTAAAATGTCTTTGTCTCTCGGGCTGCAATCTATCAGATGAATACTTTCCCATGGTTTTAGCATGGTTTGGTAATGTGAAAGAGTTAGAGCTATCAAGCAATAGCTTCACATTTCTTCCAGAATGCATCAAACAGTGTCGCTCTTTAAAATTACTTAACTTGGATAACTGTGAGCATCTTCGAGAAATTAGAGGGACTCCACCAAATTTAGAATATTTCTCTGCTGGAAATTGCAAATCCTTGAGTTTCTGTTGTTCAGCCATGCTATTGGACCAGGAACTGCATGAGGCTGGAAACACCATGTTTTGTTTGCCAGGATCTTGGATTCCAGAATGGTTAGAGCAACAAAGTATAGGTCCATCACTATCTTTCTGGTTTCGTGAGAAATTCCCTGTCATGGATCTGTGTTTTGTTATTGGGCCAATGGGTACTGACTCTATATTGTTTAGACCAATCATGACCATCAATGGCAACACAATGGAGATAAACTCCTTAACTGATAAGAGATTTTGTTTCGATTTCCCGGCATCGGATTATCATATACTCATCATTGGTACAAAGTACATGAAGTTTGGAGATAATCTGGATAAACCACTCTCAAAAAACGAATGGAATCATGTGGTGGTTTCCATTGCTCTTGATTTTGAACCAACCCCTAAAGAGATAATTGTCAAGCAAACTGCACTCCATGTAATCAAACCAGAAAGTAGCATGGATGATATCCAATTCACCGATCCTTGTAATCAACCTTCCTTCAAAGAGAAGCAAAGATTGGTTGACACTGTTGATTGTCACAGACAATTTATGCAGCAGCAAACCACTTTGGTTTCATTGGAACCACTTTCAATGAATCCACCTCAAGCATGCAAAAATAATCTGAATTGGGATTCATTTTCAACTGGAACAAGTAGCATTGCCAGTGTCCAGGAATATGAAATTGCATCACAGAAGTTACGTTTGGACATGGGGATTTTGCAATTTGTGCAGCAGCGGAAAAGATTGGCTATTTTGGGTTTACTGCAACAACGACGCACGGCTTCATTGGATTTACTGCAACGAAGGGGCAGAGAATTGCTTTCTTTGCTTTCTTCTCCATCATTGGAGTTGATGGTCTCATGGGAGAGGAGATGCATCACCAGTGTCCAAGGCTTGCAGGAGCAACATTTACCTTCCACCATCAAACAAAACTTTGAAGGTTGTAATGGCATCAATGATGCCAAAGTGAATGAAGTCATAAGATGCAACAACAATTCTGGAAATGATAATGAGAGAACCCCATTAATGGAAGAGCTACTAATGACAAAGGAGAATGATGTTCACAGCAAGAGATACCAACATGTCGGGAAAATGGCTTCGGATCCAATGGAATTAGAATATCTTTTACACATTCAGAAGATCAATTTCTCTCAAAGATAA 3816 0.3952 MSSSFSYDVFLSFRGSDTRYGFTGNLYKALCDKGIHAFIDDEELQRGDEIGEALIEAIKQSRMAIVVFSKNYASSSFCLDELVKIIDCVKEKSRLLLPIFYDVHPSHVRGQSGSYAEALAMHQERFKSSNQSLNDNMGRLQKWKMALNQAACLSGKHYKLGNEYEHEFIGKIVKEVSNKINRRPLHVADYPVGMECRVQKVKSLLQFGSDSGVHIVGIYGIGGMGKTTLARAVYNSIADQFEGLCFLDGVRENAVKHGLVHLQEMLLSEIVGEKDIKIGSVSKGISIIKHRLHRKKVLLILDDVDKLEQVRATVGVPNWFGSGSRVIITTRDKHLLQGVDGKYEIEDLNEEEALELLSWNAFKDDKVDPSYKDISNQAVAYASGLPLALEVIGSLLFGKGIREWESALDQFKKIPNKRIQEILKVSYNALEENQQRIFLDIACCLKGYEFEEVEDILGAHYGVCMKYDIGVLVDKSLIKIKNGCVTLHELIEVMGKEIDRQESPKELGKRRRLWFHKDIIQVLAENTGTSEIEIICFDFPLFEEDEEVFVEWDGGAFKKMKNLKTLIIRNSHFSKGPAYLPNSLRVLEWWTYPLQDLPTDFHPNKLAICKLPRSCFTSLELATISKKFMNLTVLKFDGTECLTKIPDISSLQNLEKLTFECCENLVAIHDSVGFLDKLKILSAFGCSKLTSFPPIKLISLEQLDLSSCSSLESFPEILGKMENITQLELKYTPLKEFPFSFRNLARLQDLVLVDCGNVQLPSSIVMLSELAEIFALGCKGWLLPKQDENDEQKVSLVSSNVKCLCLSGCNLSDEYFPMVLAWFGNVKELELSSNSFTFLPECIKQCRSLKLLNLDNCEHLREIRGTPPNLEYFSAGNCKSLSFCCSAMLLDQELHEAGNTMFCLPGSWIPEWLEQQSIGPSLSFWFREKFPVMDLCFVIGPMGTDSILFRPIMTINGNTMEINSLTDKRFCFDFPASDYHILIIGTKYMKFGDNLDKPLSKNEWNHVVVSIALDFEPTPKEIIVKQTALHVIKPESSMDDIQFTDPCNQPSFKEKQRLVDTVDCHRQFMQQQTTLVSLEPLSMNPPQACKNNLNWDSFSTGTSSIASVQEYEIASQKLRLDMGILQFVQQRKRLAILGLLQQRRTASLDLLQRRGRELLSLLSSPSLELMVSWERRCITSVQGLQEQHLPSTIKQNFEGCNGINDAKVNEVIRCNNNSGNDNERTPLMEELLMTKENDVHSKRYQHVGKMASDPMELEYLLHIQKINFSQR 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02496 1271 FunFam Disease resistance protein (TIR-NBS-LRR class) 3 182 - -
Viun4g02496 1271 ProSiteProfiles TIR domain profile. 5 180 IPR000157 GO:0007165
Viun4g02496 1271 Gene3D - 179 345 IPR027417 -
Viun4g02496 1271 Gene3D Ribonuclease Inhibitor 553 718 IPR032675 -
Viun4g02496 1271 Gene3D Ribonuclease Inhibitor 719 896 IPR032675 -
Viun4g02496 1271 SMART till_3 6 153 IPR000157 GO:0007165
Viun4g02496 1271 Pfam TIR domain 7 182 IPR000157 GO:0007165
Viun4g02496 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 441 IPR027417 -
Viun4g02496 1271 Pfam NB-ARC domain 197 433 IPR002182 GO:0043531
Viun4g02496 1271 Gene3D - 5 178 IPR035897 -
Viun4g02496 1271 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 758 IPR044974 GO:0006952
Viun4g02496 1271 Gene3D - 347 431 IPR042197 -
Viun4g02496 1271 PRINTS Disease resistance protein signature 291 305 - -
Viun4g02496 1271 PRINTS Disease resistance protein signature 695 711 - -
Viun4g02496 1271 PRINTS Disease resistance protein signature 215 230 - -
Viun4g02496 1271 PRINTS Disease resistance protein signature 382 396 - -
Viun4g02496 1271 SUPERFAMILY "Winged helix" DNA-binding domain 418 523 IPR036390 -
Viun4g02496 1271 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 154 IPR035897 -
Viun4g02496 1271 SUPERFAMILY L domain-like 550 904 - -
Viun4g02496 1271 SMART AAA_5 212 351 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02496 Viun-Chr4 39973345 39979696 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02496 1 778 WRKY Transcription Factor Family AT4G12020 31.514 2.29e-84 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02496 - - var:108344624 2326.98