Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02493 ATGGCAATGGGATCACGTTCCTCTTCCTTCACCTATGATGTTTTCCTCAGCTTCAGGGGGGAAGACACACGCCATGGTTTTACTGGCCATCTCTACAAAGCCCTTCATGACAGGGGAATCTACACTTTCATTGATGATGAGGAGCTTCAGAGAGGGGAGGAAATAACACCAGCACTTCTGAAGGCAATTCAAGAGTCCAAGATTGCCATCATTGTGCTCTCTATGAACTATGCTTCTTCGTCATTTTGTTTAGACGAACTTGACTGCATACTCGAGTGCTATAACAAAAAAGATATGTTGGTTTTGCCAGTTTTCTTTAAGGTAGATCCTTCTGATGTTAGAGACCAGAAAGGTAGTTATGGAGAAGCATTGGTTAAGCATGAGCAAAGGTTCAACCATAACATGGAGAAGTTGGAGAAGTGGAAGAAGGCTTTGCGTCAAGTAGCTGACGTGTCTGGCTTTCATTTGAAACACGGAGATGGATATGAACACGAGTTTATTGGAAGGATAGTTGAGTTGGTCTCCAGCGAGATTAATCACGCTGCTTTACCTGTTGTGGATTACCCAGTTGGACTAGAGTCACAAGCACTGGAAGTAAGCAAGCTTTTGGAAGTTGGATCTGATGATGATGTCTGCATGGTGGGAATACATGGAATCGGTGGGATAGGAAAGTCAACACTTGCTTTAGCAGTTTATAATTTGATTGCTCACCATTTTGATTGTTCGTGTTTTCTTCAAAACGTGAGACAAAAATCAAACAAGCATGGGTTACAACACCTCCAAAGCATCCTTCTTCGTGAAATGCTTGGAGAGAAGGAAGTAAACTTTGCAAGTATAGAACAAGGAGCTTCAGTGATACACCACAGGCTTCAAAGAAAGAAGTTTATCTTGATTCTAGATGATGTTGACAAATACGGGCAATTGCAGGCTATTGTTGGAAGACCTGATTTATTGGGTCCTGGCAGCAGAGTCATCATCACTACTCGGGACAAACAATTATTGTCATCTTATGGGGTTACAAAAACGTATGAGGTGAGGGTACTGAATAAGAACAATGCTCTTGACTTGCTTTCATGGAAAGCTTTTAAAACAAAAAACATTGATGCAAGTTATAAGGAGGTCCTGAATGATGTAGTGATTCATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAACTATAGAAGAATGGAAATCCGCCATCAAACAGTATAAAAGAATTCCTAATAATCAAATCATGGAGATACTTAGAGTGAGCTTTGATTATTTGGAGGAAGAAGAGAAGAGCGTTTTTCTTGATATTTGTTGCTTAAATATATATGCCTTGTCAAAGCTTGAAAATTTACTTCATGCTCATTATGGCTATTGCATGAAATATCATATTGGGGTGTTGGTTGACAAATCTCTTATAAAGTTTAATTGCTATCGTCAAGAAACTAGAATTTCATTGCATAGCTTGATCGAGGACATGGGGAAAGAAATTGTGAGGCAAGAATCACCAAAATATCCAGGGAAGCGCAGTAGATTATGGTTACCAGAAGACATAATTCAAGTTTTGGAAGATGACAAGGGAAGTAGTGAGATTGAAATCATATGTCTGGATCTTCCAGAATTTGTCGAGGAAGCAATAGTAGAACTCAATTCAAAAGCATTCAAGAAGATGGAAAACCTCAAAACACTTATTCTTAGAAATGCTAATTTTTCCAAAGGTCCCAAATACCTTCCAAATAGTTTGAGGGTGTTGGAATGGTGGGGATATCCTTCACATTGCTTACCATCTGATTTTCATCCCAAAAAACTTGTCATATGCAAGTTACCCCGTAGCTCCATTTCAACCCTTGAGTTATCAAAGGTTTGGCAGAGTTTTGTGAATCTTAGAGAATTAAATTTTGATGGGTGCAAATGTTTAACAGAAATACCTGACATATCTGTTCTACAAAATTTGGAAGAACTTTCATTTGAAGATTGTGTGAATCTAATTACAGTTCACAACTCAGTTGGTTTTCTGGATAAACTTAAGACATTGAGTGCTAATGGATGCCGAAAGCTTAGGACTTTTCCACCTATCAAGTTGACCTCTCTTGAAAAACTGGAACTTTCACATTGTTCCAGTCTTGAGAGTTTTCCAGAAATATTAATAAAGATGGAAAACATAAGGGAACTTCATTTGTGTTACTCCCTCGTAACAGAGTTGCCACTTTCATGTCAAAATCTTACAAGGCTTCGAACATTGGAAATGTTTTCTTTAAATAGTGCAATTGTCAAGGTGCCCAGTAGCATTATCATGATGCCAGAACTGACTGATATCTTCGTCTGTGGATTGAAAGGGTTGCAATGGCTAAAACAGGAAGAGGGTGAAGAGCAAATGGGGCAAGTAGTAGTACCTTCAAAGGTGGAACGGCTTAGTGTCTTAAGTTGCAATCTCAATGATGATTTCTTTTCGATAGATTTCACAAGGTTTGCTCTTGTGAAGGAATTAGCGCTACCTGAGAATAATTTCACCATCCTTCCTGAATGTCTGAAACAATGCCAATTTTTATGGATTCTTGATGTGAGTGGTTGCAAGCATCTTCAGGAAATTAGAGGCATTCCACCAAACTTAAGACATTTCTTTGCAATAAAATGTATATCCTTGGCTTCCTCGAGTAAACGCATGCTCCTAAATCAGGAACTGCATGAGGCTAGAAACACTGTGTTTTGTTTGCCAGGAGCTGAGCTTCCAAAGTGGTTCAATCACCAGAACCGGGGAACTTCAATTTCTTTCTGGTTTCGTAATAAGTTCCCTGACAAAGTTCTGTGCGTTCTTGTTGCACCTATCGAAAACGATTTTTTTCGTTCCAGGGTTTTCATCAATGGCAAAGCATACACCGGCTACTATAGTCACCATCACTTGACAGGGGAGCATCATGTATATCTTTTTGATATGCGAGAAGAGTTAAGATTCAGAGATAGTCCGTATGAGGTGCCTTTTGAAAGTGAATGGAACCATGCGAAGGTTACATTTCCAGAGGGTATAGATACCTCTATTAACCATGCAAAAATCGGAATCCACATAGTCAAACAGAAAAATAGCATGGAGGATGTTAAATTCACCGATCCTTGCAGCAAGACAAAATCAGATGAAGATATCAACAGTTCTGACTCACAATCTACCAGTTACTAA 3183 0.3911 MAMGSRSSSFTYDVFLSFRGEDTRHGFTGHLYKALHDRGIYTFIDDEELQRGEEITPALLKAIQESKIAIIVLSMNYASSSFCLDELDCILECYNKKDMLVLPVFFKVDPSDVRDQKGSYGEALVKHEQRFNHNMEKLEKWKKALRQVADVSGFHLKHGDGYEHEFIGRIVELVSSEINHAALPVVDYPVGLESQALEVSKLLEVGSDDDVCMVGIHGIGGIGKSTLALAVYNLIAHHFDCSCFLQNVRQKSNKHGLQHLQSILLREMLGEKEVNFASIEQGASVIHHRLQRKKFILILDDVDKYGQLQAIVGRPDLLGPGSRVIITTRDKQLLSSYGVTKTYEVRVLNKNNALDLLSWKAFKTKNIDASYKEVLNDVVIHASGLPLALEVIGSNLFGKTIEEWKSAIKQYKRIPNNQIMEILRVSFDYLEEEEKSVFLDICCLNIYALSKLENLLHAHYGYCMKYHIGVLVDKSLIKFNCYRQETRISLHSLIEDMGKEIVRQESPKYPGKRSRLWLPEDIIQVLEDDKGSSEIEIICLDLPEFVEEAIVELNSKAFKKMENLKTLILRNANFSKGPKYLPNSLRVLEWWGYPSHCLPSDFHPKKLVICKLPRSSISTLELSKVWQSFVNLRELNFDGCKCLTEIPDISVLQNLEELSFEDCVNLITVHNSVGFLDKLKTLSANGCRKLRTFPPIKLTSLEKLELSHCSSLESFPEILIKMENIRELHLCYSLVTELPLSCQNLTRLRTLEMFSLNSAIVKVPSSIIMMPELTDIFVCGLKGLQWLKQEEGEEQMGQVVVPSKVERLSVLSCNLNDDFFSIDFTRFALVKELALPENNFTILPECLKQCQFLWILDVSGCKHLQEIRGIPPNLRHFFAIKCISLASSSKRMLLNQELHEARNTVFCLPGAELPKWFNHQNRGTSISFWFRNKFPDKVLCVLVAPIENDFFRSRVFINGKAYTGYYSHHHLTGEHHVYLFDMREELRFRDSPYEVPFESEWNHAKVTFPEGIDTSINHAKIGIHIVKQKNSMEDVKFTDPCSKTKSDEDINSSDSQSTSY 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02493 1060 PRINTS Disease resistance protein signature 213 228 - -
Viun4g02493 1060 PRINTS Disease resistance protein signature 382 396 - -
Viun4g02493 1060 PRINTS Disease resistance protein signature 696 712 - -
Viun4g02493 1060 PRINTS Disease resistance protein signature 289 303 - -
Viun4g02493 1060 SMART till_3 11 151 IPR000157 GO:0007165
Viun4g02493 1060 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 180 - -
Viun4g02493 1060 Pfam NB-ARC domain 201 413 IPR002182 GO:0043531
Viun4g02493 1060 Gene3D - 347 431 IPR042197 -
Viun4g02493 1060 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 717 IPR044974 GO:0006952
Viun4g02493 1060 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 154 IPR035897 -
Viun4g02493 1060 Gene3D - 5 181 IPR035897 -
Viun4g02493 1060 Gene3D - 182 345 IPR027417 -
Viun4g02493 1060 Pfam TIR domain 12 177 IPR000157 GO:0007165
Viun4g02493 1060 Gene3D Ribonuclease Inhibitor 716 900 IPR032675 -
Viun4g02493 1060 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Viun4g02493 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 441 IPR027417 -
Viun4g02493 1060 SUPERFAMILY L domain-like 543 899 - -
Viun4g02493 1060 Gene3D Ribonuclease Inhibitor 534 715 IPR032675 -
Viun4g02493 1060 SUPERFAMILY "Winged helix" DNA-binding domain 418 527 IPR036390 -
Viun4g02493 1060 MobiDBLite consensus disorder prediction 1037 1060 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02493 Viun-Chr4 39937803 39942274 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02493 7 785 WRKY Transcription Factor Family AT4G12020 30.914 8.21e-78 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02493 - - gmx:100812810 1543.1