Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02421 ATGCAGTACACCTATATAAAACGCAATATATATCTCACCAAGAAGGTCAAGAGATCCCGGTTTGAGGATGATGGCATATTCTGTTCCTGTACTTCTGCTGGATCTACTAGTGTATGTGGTAGAGATTGCCATTGTGGTATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCTTGTCTTAACAAACCATTCCAGAATCGCCCAGTGAAAAAGATGAAATTGGTTCAGACTGAGAAATGTGGTTCTGGTATTGTGGCGGATGAAGATATCAAACACGGGGAGTTTGTTATAGAATATGTTGGAGAAGTCATTGATGACAGAACATGTGAGGAAAGGCTTTGGAACATGAAACATCGTGGGGAAACAAATTTCTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCAAGATACATCAACCATAGTTGCTGTCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACCAGAATTGGCATATTTGCAACTCGTGACATACAAAAGGGCGAGCATCTGACTTACGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGTCACTGTGGTGCTGCTGCATGTAGGCGTAAATTGGGTGTTCGACCTACCAAACCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTGCATACCAGGTTTATCAGAATGGACGTTTGCAAATTGGTGGTTCCCGTGTTGACCACCGAAAATGCTTACACAATTGCATTGGTGAAGTTATTAGAATAAAACTCTTTGAAAAGGAGAGGTTTGGAGTCATTAAACGGTTTGATAAATATTCTCGAAAACATTCAATCATGTTCGAGGATGGTCATGTTGAAATTTATGACATGTCAAAAGAGGACTGGGAGCTTGTGAGATAG 921 0.3974 MQYTYIKRNIYLTKKVKRSRFEDDGIFCSCTSAGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPVKKMKLVQTEKCGSGIVADEDIKHGEFVIEYVGEVIDDRTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAAACRRKLGVRPTKPKMSSDAALKLVAYQVYQNGRLQIGGSRVDHRKCLHNCIGEVIRIKLFEKERFGVIKRFDKYSRKHSIMFEDGHVEIYDMSKEDWELVR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02421 306 ProSiteProfiles Post-SET domain profile. 196 212 IPR003616 -
Viun4g02421 306 SMART PostSET_3 196 212 IPR003616 -
Viun4g02421 306 Pfam SET domain 84 189 IPR001214 GO:0005515
Viun4g02421 306 CDD SET_ASHR3-like 74 212 - -
Viun4g02421 306 PANTHER SET DOMAIN PROTEINS 2 230 - -
Viun4g02421 306 SMART shorttest3 23 72 IPR006560 GO:0005634|GO:0042054
Viun4g02421 306 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 250 IPR025787 -
Viun4g02421 306 FunFam Histone-lysine N-methyltransferase 1 228 - -
Viun4g02421 306 ProSiteProfiles SET domain profile. 73 190 IPR001214 GO:0005515
Viun4g02421 306 SMART set_7 73 196 IPR001214 GO:0005515
Viun4g02421 306 Gene3D SET domain 1 228 IPR046341 -
Viun4g02421 306 ProSiteProfiles AWS domain profile. 23 71 IPR006560 GO:0005634|GO:0042054
Viun4g02421 306 SUPERFAMILY SET domain 2 208 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02421 Viun-Chr4 39414267 39422996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02421 46 208 C2H2 Transcription Factor Family AT2G23740 34.973 4.98e-23 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun4g02421 SET 8.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02421 - - pvu:PHAVU_004G131700g 606.675