Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02420 ATGCCTTTGAAGGAATCAAGAATATCAAGTACACTATCAGATTTCATGCCTGCCATGAAAAAGAATACTGAGCAGACTCATTTTGGATCTGTATTCAACAAGTTGTTGAAGGAGCTTCAAGAACCTGTTGACTTTGAACTTCCAGATTGGTTTAAATCGAAACCAATGCAGTACACCTATATAAAACGCAATATATATCTCACCAAGAAGGTCAAGAGATCCCGGTTTGAGGATGATGGCATATTCTGTTCCTGTACTTCTGCTGGATCTACTAGTGTATGTGGTAGAGATTGCCATTGTGGTATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCTTGTCTTAACAAACCATTCCAGAATCGCCCAGTGAAAAAGATGAAATTGGTTCAGACTGAGAAATGTGGTTCTGGTATTGTGGCGGATGAAGATATCAAACACGGGGAGTTTGTTATAGAATATGTTGGAGAAGTCATTGATGACAGAACATGTGAGGAAAGGCTTTGGAACATGAAACATCGTGGGGAAACAAATTTCTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCAAGATACATCAACCATAGTTGCTGTCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACCAGAATTGGCATATTTGCAACTCGTGACATACAAAAGGGCGAGCATCTGACTTACGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGTCACTGTGGTGCTGCTGCATGTAGGCGTAAATTGGGTGTTCGACCTACCAAACCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTGCATACCAGGTTTATCAGAATGGACGTTTGCAAATTGGTGGTTCCCGTGTTGACCACCGAAAATGCTTACACAATTGCATTGGTGAAGTTATTAGAATAAAACTCTTTGAAAAGGAGAGGTTTGGAGTCATTAAACGGTTTGATAAATATTCTCGAAAACATTCAATCATGTTCGAGGATGGTCATGTTGAAATTTATGACATGTCAAAAGAGGACTGGGAGCTTGTGAGATAG 1086 0.3932 MPLKESRISSTLSDFMPAMKKNTEQTHFGSVFNKLLKELQEPVDFELPDWFKSKPMQYTYIKRNIYLTKKVKRSRFEDDGIFCSCTSAGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPVKKMKLVQTEKCGSGIVADEDIKHGEFVIEYVGEVIDDRTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAAACRRKLGVRPTKPKMSSDAALKLVAYQVYQNGRLQIGGSRVDHRKCLHNCIGEVIRIKLFEKERFGVIKRFDKYSRKHSIMFEDGHVEIYDMSKEDWELVR 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02420 361 ProSiteProfiles SET domain profile. 128 245 IPR001214 GO:0005515
Viun4g02420 361 Gene3D SET domain 32 283 IPR046341 -
Viun4g02420 361 SMART shorttest3 78 127 IPR006560 GO:0005634|GO:0042054
Viun4g02420 361 ProSiteProfiles Post-SET domain profile. 251 267 IPR003616 -
Viun4g02420 361 SMART set_7 128 251 IPR001214 GO:0005515
Viun4g02420 361 CDD SET_ASHR3-like 129 267 - -
Viun4g02420 361 SUPERFAMILY SET domain 53 263 IPR046341 -
Viun4g02420 361 ProSiteProfiles AWS domain profile. 78 126 IPR006560 GO:0005634|GO:0042054
Viun4g02420 361 SMART PostSET_3 251 267 IPR003616 -
Viun4g02420 361 FunFam Histone-lysine N-methyltransferase 45 283 - -
Viun4g02420 361 Pfam SET domain 139 244 IPR001214 GO:0005515
Viun4g02420 361 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 52 305 IPR025787 -
Viun4g02420 361 PANTHER SET DOMAIN PROTEINS 40 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02420 Viun-Chr4 39414267 39422996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02420 101 266 C2H2 Transcription Factor Family AT2G23740 34.946 3.26e-23 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun4g02420 SET 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02420 - - gmx:100808183 654.055