Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02417 ATGCCTGCCATGAAAAAGAATACTGAGCAGACTCATTTTGGATCTGTATTCAACAAGTTGTTGAAGGAGCTTCAAGAACCTGTTGACTTTGAACTTCCAGATTGGTTTAAATCGAAACCAATGCAGTACACCTATATAAAACGCAATATATATCTCACCAAGAAGGTCAAGAGATCCCGGTTTGAGGATGATGGCATATTCTGTTCCTGTACTTCTGCTGGATCTACTAGTGTATGTGGTAGAGATTGCCATTGTGGTATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCTTGTCTTAACAAACCATTCCAGAATCGCCCAGTGAAAAAGATGAAATTGGTTCAGACTGAGAAATGTGGTTCTGGTATTGTGGCGGATGAAGATATCAAACACGGGGAGTTTGTTATAGAATATGTTGGAGAAGTCATTGATGACAGAACATGTGAGGAAAGGCTTTGGAACATGAAACATCGTGGGGAAACAAATTTCTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCAAGATACATCAACCATAGTTGCTGTCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACCAGAATTGGCATATTTGCAACTCGTGACATACAAAAGGGCGAGCATCTGACTTACGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGTCACTGTGGTGCTGCTGCATGTAGGCGTAAATTGGGTGTTCGACCTACCAAACCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTGCATACCAGGTTTATCAGAATGGACGTTTGCAAATTGGTGGTTCCCGTGTTGACCACCGAAAATGCTTACACAATTGCATTGGTGAAGTTATTAGAATAAAACTCTTTGAAAAGGAGAGGTTTGGAGTCATTAAACGGTTTGATAAATATTCTCGAAAACATTCAATCATGTTCGAGGATGGTCATGTTGAAATTTATGACATGTCAAAAGAGGACTGGGAGCTTGTGAGATAG 1041 0.3958 MPAMKKNTEQTHFGSVFNKLLKELQEPVDFELPDWFKSKPMQYTYIKRNIYLTKKVKRSRFEDDGIFCSCTSAGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPVKKMKLVQTEKCGSGIVADEDIKHGEFVIEYVGEVIDDRTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAAACRRKLGVRPTKPKMSSDAALKLVAYQVYQNGRLQIGGSRVDHRKCLHNCIGEVIRIKLFEKERFGVIKRFDKYSRKHSIMFEDGHVEIYDMSKEDWELVR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02417 346 SMART shorttest3 63 112 IPR006560 GO:0005634|GO:0042054
Viun4g02417 346 PANTHER SET DOMAIN PROTEINS 26 265 - -
Viun4g02417 346 CDD SET_ASHR3-like 114 252 - -
Viun4g02417 346 Pfam SET domain 124 229 IPR001214 GO:0005515
Viun4g02417 346 SUPERFAMILY SET domain 38 248 IPR046341 -
Viun4g02417 346 ProSiteProfiles AWS domain profile. 63 111 IPR006560 GO:0005634|GO:0042054
Viun4g02417 346 ProSiteProfiles SET domain profile. 113 230 IPR001214 GO:0005515
Viun4g02417 346 ProSiteProfiles Post-SET domain profile. 236 252 IPR003616 -
Viun4g02417 346 SMART set_7 113 236 IPR001214 GO:0005515
Viun4g02417 346 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 290 IPR025787 -
Viun4g02417 346 FunFam Histone-lysine N-methyltransferase 30 268 - -
Viun4g02417 346 Gene3D SET domain 17 268 IPR046341 -
Viun4g02417 346 SMART PostSET_3 236 252 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02417 Viun-Chr4 39414265 39422996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02417 86 251 C2H2 Transcription Factor Family AT2G23740 34.946 3.41e-23 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun4g02417 SET 1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02417 - - gmx:100808183 654.055