Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02387 ATGGCTATAAGATCACACTCCCAAAAATTCACCTACGATGTGTTCCTCAACTTCAGAGGCTCAGACACACGCTATGGTTTTGCTGGCAATCTTTACAAAGCTCTTGATGATAGGGGAATCCACACTTTCATTGATGATGAGAAGCTTCAGGGTGGAGATGAACTAGCACCAACACTTGTGAAGGCAATTCAAGAGTCCAGGATTGCCATCACTGTGCTCTCTCACACCTATGCTTCTTCTTCATTTTGTTTGGATGAACTGGTTTACATCCTTGAACGTGCTGAGGAGAAAAAGTTGCTGGTTTTGCCAGTTTTTTATAACGTGGATCCTTCTTTTGTGAGGTACCAAGAAGGAAGTTATGGTGAAGCATTGGCTAGGCATGAGGAAAGGCTCAAAGCTAATAATAATAAGGAGAAGTTGGAGAAATGGAAGATGGCTCTTCATCAAGTAGCTAACTTCTCTGGCTTTCATTACAAATATGGAGAAGAATATGAATACAAGTTTATTGGGAGGATTGTTGAGTGGGTCTCTGGTGAGATTAATCGTGCTCCTTTACATGTGGTGGATTACCCGGTTGGATTAGATTCACAAGTGTTAAAAGTGATGAAGCTTTTGGATGTTGGATCTGGTGATGGTGTCCACTTGATAGGGTTCTATGGAATGGGTGGGGTAGGGAAAACGTCACTTGCTTCAGCAGTTTATAATTTGATTGCTGGCCATTTTGATGGTTCCTGTTTTCTTCAAAATGTGAGAGAGAAATCAAACAAACACGGGTTAGATCATCTTCAAAGCATCATTCTTTCCGAAATACTTGGAGATAAGAGAATCATGTTTCCAAGTGAGCAGCAAGGAATTTCAATGATACAACACAGACTCCAGAAAAAGAGGCTTCTTTTGATTCTAGATGATGTTGACAAGCACGAGCAGTTACAGACACTTGTTGGAAGGCCTCACTGGGTTGGTCGTGGAAGCAAAGTCATCATCACCACTCGGGACAAACATCTGCTGACATCTCATCATGTTCAAGAAACATATGAGGTGAAGAAATTAAACAAGAACCATGCTCTTCAATTACTTACATGGAAAGTTTTCAAATCAGAACATGTTTATCCGGCATACGTGGAGGTGTTGAATCGTGCAGTAACTTATGCTTGTGGCCTTCCATTGGCTTTGGAAGTAATAGGTGCCAACCTGTGTGGAAAAAGTATACAAGAATGTGAATCTGTCATAGATCAATATAAAATAATTCCAAACAATCGAATCCAAGAGACTCTTAAAGTAAGCTTTGATGCTTTGCAGGAAGAAGAGAAGAGAGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATAAACTAACAGAAGTTGAAGATATACTTCATGCTCATCATGGTGCTTGTATGAAATATCAGATATGTGTATTGGCTGAAAAATCTCTCATAAAGATTGATCAGTATGACAGAGTTACATTGCATGACTTGGTAGAGGACATGGGTAAGGAAATTGTCAGACAAGAATCACCAGAAGAACCAGGGAAGCGCAGTAGGTTATGGTTACCAAATGCTATAATCCAAGTTTTGGAAGACAACACTGGAACAAGTGAAATTAAAATCATATGTCTGGATTTCCCCTTGTTTGAAAAGAAAATGGTAGAATGGGATGGGATGGCCTTCCAGAAGACGGAAAACCTCAAAACACTTATTATTAGAAATGGTATTTTTTCTGATGATCCCAAATGTTTTCCAAATAGTTTGAGAGTGTTGGAATGGTGGAGATATCCTTCACATTGTTTACCATCTTATTTTCAACCAAAACAACTTGCAATATGCAAGTTACCGCATAGCCTCTTCATGTCATTTCAGATGGGTGGCTTAAGCAAGAAGCTCAGGAATCTACGGGTTTTGAATTTTGACTGCTGTGAATGTTTAACTCAGATACCCGATGCTGTATCTAATCTCCAAAATTTGGAGGAACTTTCGTTTAAAAATTGCGTAAATTTAGTTAGAGTTCATAATTCGGTTGGTCTGCTGCATAAACTTAGGATATTGGAAGCTTCTGGTTGCATCAAGCTTAGGAATTTTCCACCCCTGAAGTTGAGTTCTCTTGAAAAACTTGAACTTTCACATTGTTCTAGTCTCAAGAGTTTTCCAGAAATTATAGGAAAGATGGAAAACATAAGGGAACTTCGGTTGCTAGGAACTCTCATAAAAGAGTTGCCACTTTCATTTCAAAATCTAACTCGGCTTAGAAAGTTGTCCTTGCTATTCTGTGGAATTGTTCAGTTACAAAGCAGCATTGTCATGATGCCAGAACTGACTCTTATTGAGGCTTGGGGATGGAAAGGGTGGCAGTGGACAAAGCGGGAAGAGGATGAAGAAAAAGATGGCTCAATGGTACCTTCAAAAGTAGAATTGCTTTGGGCGTCAAAATGCAACCTGTGTGATGATTTTTTTCAAATAGGTTTCACACGGTTTGCTCATGTGATAGATTTAGACCTATCGAACAATAATTTCACACACCTTCCTGAATGCATCAAAGAATGTCAATTTTTAAAAAAGCTTGACGTCAGTTGTTGCAGGCAACTTCGGGAAATCAGAGGAATTCCACCAAAGTTGAAACATTTCAATGCAACAAACTGTTTGTCACTGACATCCTCGAGTATAAGCATGTTCCTGAACCAGGATCTGCATGAGACTCGAAAAACTCTGTTACTTTTGCCAGGATCTAGGAACCCTGAATGGTTCAATCACACAAGTTATAGACCATCGAGTTCTTTCTGGATTCGCAACAAGTTCCCTGGCAAAGTTCTTTGTCTTTTTGTTGCACCGAAGGATAGAGACATTAGTGATTATGTTAAACCCATGTTGCTCATCAATGACAAAGTTTATGTATGTTTCTTTGATAGGCTCAAGTTCTTGAAGTTGGGAGCAGAACACACATTTCTTTTCGATCTACGAAATTTAATTTTTACCAACAATCTGTATGAAGTGCCTTTAGAAAATGAATGGAACCATGTGAAGGTTACATGTTTTGATTTGACAGCAGCCTCAATGCCTACACCGGTGCCTATACAAAGCGGAATCCATGTATTCAAGCAGGAAAATAGCGATGAAGATATCATGTTCACTGATCCTTATACAAAGAAGAGGGAGCTAGAAATGATCCTTCCTCTTTCTCCATCTATTATTTTGGACTTGGATTTGAACTTTGATTATTTGGACTTTTGA 3225 0.3904 MAIRSHSQKFTYDVFLNFRGSDTRYGFAGNLYKALDDRGIHTFIDDEKLQGGDELAPTLVKAIQESRIAITVLSHTYASSSFCLDELVYILERAEEKKLLVLPVFYNVDPSFVRYQEGSYGEALARHEERLKANNNKEKLEKWKMALHQVANFSGFHYKYGEEYEYKFIGRIVEWVSGEINRAPLHVVDYPVGLDSQVLKVMKLLDVGSGDGVHLIGFYGMGGVGKTSLASAVYNLIAGHFDGSCFLQNVREKSNKHGLDHLQSIILSEILGDKRIMFPSEQQGISMIQHRLQKKRLLLILDDVDKHEQLQTLVGRPHWVGRGSKVIITTRDKHLLTSHHVQETYEVKKLNKNHALQLLTWKVFKSEHVYPAYVEVLNRAVTYACGLPLALEVIGANLCGKSIQECESVIDQYKIIPNNRIQETLKVSFDALQEEEKRVFLDIACCFKGYKLTEVEDILHAHHGACMKYQICVLAEKSLIKIDQYDRVTLHDLVEDMGKEIVRQESPEEPGKRSRLWLPNAIIQVLEDNTGTSEIKIICLDFPLFEKKMVEWDGMAFQKTENLKTLIIRNGIFSDDPKCFPNSLRVLEWWRYPSHCLPSYFQPKQLAICKLPHSLFMSFQMGGLSKKLRNLRVLNFDCCECLTQIPDAVSNLQNLEELSFKNCVNLVRVHNSVGLLHKLRILEASGCIKLRNFPPLKLSSLEKLELSHCSSLKSFPEIIGKMENIRELRLLGTLIKELPLSFQNLTRLRKLSLLFCGIVQLQSSIVMMPELTLIEAWGWKGWQWTKREEDEEKDGSMVPSKVELLWASKCNLCDDFFQIGFTRFAHVIDLDLSNNNFTHLPECIKECQFLKKLDVSCCRQLREIRGIPPKLKHFNATNCLSLTSSSISMFLNQDLHETRKTLLLLPGSRNPEWFNHTSYRPSSSFWIRNKFPGKVLCLFVAPKDRDISDYVKPMLLINDKVYVCFFDRLKFLKLGAEHTFLFDLRNLIFTNNLYEVPLENEWNHVKVTCFDLTAASMPTPVPIQSGIHVFKQENSDEDIMFTDPYTKKRELEMILPLSPSIILDLDLNFDYLDF 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02387 1074 Gene3D - 349 433 IPR042197 -
Viun4g02387 1074 ProSiteProfiles TIR domain profile. 10 180 IPR000157 GO:0007165
Viun4g02387 1074 Pfam NB-ARC domain 197 414 IPR002182 GO:0043531
Viun4g02387 1074 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 879 IPR044974 GO:0006952
Viun4g02387 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 443 IPR027417 -
Viun4g02387 1074 SUPERFAMILY L domain-like 503 888 - -
Viun4g02387 1074 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 156 IPR035897 -
Viun4g02387 1074 PRINTS Disease resistance protein signature 215 230 - -
Viun4g02387 1074 PRINTS Disease resistance protein signature 384 398 - -
Viun4g02387 1074 PRINTS Disease resistance protein signature 291 305 - -
Viun4g02387 1074 PRINTS Disease resistance protein signature 696 712 - -
Viun4g02387 1074 SMART till_3 11 153 IPR000157 GO:0007165
Viun4g02387 1074 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 182 - -
Viun4g02387 1074 Gene3D - 9 180 IPR035897 -
Viun4g02387 1074 Gene3D - 181 345 IPR027417 -
Viun4g02387 1074 Pfam TIR domain 12 174 IPR000157 GO:0007165
Viun4g02387 1074 Gene3D Ribonuclease Inhibitor 543 911 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02387 Viun-Chr4 39260534 39264537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02387 12 753 WRKY Transcription Factor Family AT4G12020 30.248 2.29e-71 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02387 - - vum:124820577 1774.21