Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02380 ATGGCTTCCCTTGCAGCTTCCACTGCTGCTGCATCCCTTGGCATGTCAGAAATGCTTGGAAACCCGATCAACCTCAGTGGTGCCACAAGGCCTGCTCCATCTCCCTCTAGCCCTGCCTCCTTCAAGACTGTGGCTCTTTTCTCCAAAAAGAAGGCAGCACCACCTAAAAAAGCTGCTGCTGTTGCCCCTGCCAATGATGAGCTTGCCAAGTGGTATGGTCCTGACAGAAGGATCTTCTTGCCAGAGGGTCTCTTGGACCGATCTGAGATCCCAGAGTACTTGACTGGAGAAGTCCCCGGAGATTATGGTTATGATCCTTTTGGTCTCAGCAAGAAGCCAGAGGACTTTGCCAAATATCAGGCATTTGAGTTGATTCACGCCAGATGGGCAATGCTTGGTGCAGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCAAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACAGGAGCTCTGCTTCTTGATGGGGGTACGTTGAACTACTTTGGGAAACCCATTCCCATCAATCTTATTGTGGCTGTCATTGCTGAGATAGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATCAATGGCCTGAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTTGCAAATGATCCAGATCAAGCTGCACTGCTAAAGGTGAAGGAAATCAAGAATGGTAGACTTGCTATGTTTGCCATGCTTGGTTTCTACTTCCAAGCCTATGTGACTGGAGAAGGTCCTGTTGAGAACCTTGCAAAGCATCTCAGTGACCCTTTTGGCAACAACTTGCTCACAGTCATTGCTGGAAATGCTGAAAGAGCTCCAACTCTCTAA 870 0.4828 MASLAASTAAASLGMSEMLGNPINLSGATRPAPSPSSPASFKTVALFSKKKAAPPKKAAAVAPANDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGNAERAPTL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02380 289 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 35 278 IPR001344 GO:0009765|GO:0016020
Viun4g02380 289 SUPERFAMILY Chlorophyll a-b binding protein 70 279 - -
Viun4g02380 289 Pfam Chlorophyll A-B binding protein 91 252 IPR022796 -
Viun4g02380 289 Gene3D Chlorophyll a/b binding protein domain 78 289 - -
Viun4g02380 289 FunFam Chlorophyll a-b binding protein, chloroplastic 78 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02380 Viun-Chr4 39242597 39245136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02380 11 289 Chloroplast and Mitochondria Gene Families AT4G10340 82.857 1.35e-153 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02380 K08916 - gmx:100789786 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02380 4 39242597 39245136 Viun4g02380 4 39242597 39245136 ECH
Viun4g02380 4 39242597 39245136 Viun7g02418 7 28219546 28221481 PCT