Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02368 ATGGAGGAAAAAGAGATTTTTAGTTCTGGGCAGGCTGTTAAGGTTGTCGAGCCCCCCCAGAGCTTCCACGTGGCACTAGGCTCCGTGCAGTTTTCTGGGCCCACGGGGGATTCGCCGGCACCGGTGAGTTCTCCGGTGATTACTTCCGGTAGTACAGAGGGGAAGAAGAAGAGGGGCCGGCCTAGGAAATATGGACCGGACGGCAATGTGGCGCTGTCGCCGATGCCGATATCATCGTCGATTCCATTGACCGGAGACTTCTCAGCCTGGAAAAGGGGCAGAGGAAAGCCAGTTGAATCAATCAAAAAGTCTTTTAAGTTTTATGAAGTTGAAGGTCAAGGTGCAGGACAAGGTGATCAAATTGCATACTCAGTTGGTGCCAATTTCACACCTCACATCCTTGTAGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCTCAACAAGGATGTCAAGCGATTTGCATTCTGTCTGCAAACGGCACAATTTCAAATGTTACACTACGCCAACCAACTTCTTCTGGTGGTACTTTAACATATGAGGGGCGCTTTGAAATTCTTTCCTTGACTGGTTCATATATGCCAACTGAGAATGGGTTTACAAAGAGCAGATCTGGTGGAATGAGCATCTCATTGGCCGGTCCAGACGGTCGAGTAATGGGGGGTGGACTCGCCGGTTTGCTGGTAGCTGCCGGTCCTGTGCAGGTTGTTGTGGCTAGTTTTGTTCCTGGTCACCAGCTAGAGCAGAAACCGAAGAAGCCGAGGGTGGAGCATGTTCCAATGACTGCTGCACCTATACATGCCAGCCCTATTCATGTGAGCACTACTTCTGCAGAAGATATAAGAATTGGTCTTGGTGGAGTAAAGCCAATCTTGACACCAGCAGCTTTTCAAATGGACAGCATCTTTGGCAATGGACAACCTTCTGATGATGAGGCTCCTTTCCCTGAAGAAGAAGAAGATGAAGAAGAAGAAGAGCCTAACACAAGCTATGCAGATGCTGAAGTTGCTAGCTGA 1026 0.4864 MEEKEIFSSGQAVKVVEPPQSFHVALGSVQFSGPTGDSPAPVSSPVITSGSTEGKKKRGRPRKYGPDGNVALSPMPISSSIPLTGDFSAWKRGRGKPVESIKKSFKFYEVEGQGAGQGDQIAYSVGANFTPHILVVNAGEDVTMKIMSFSQQGCQAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLTGSYMPTENGFTKSRSGGMSISLAGPDGRVMGGGLAGLLVAAGPVQVVVASFVPGHQLEQKPKKPRVEHVPMTAAPIHASPIHVSTTSAEDIRIGLGGVKPILTPAAFQMDSIFGNGQPSDDEAPFPEEEEDEEEEEPNTSYADAEVAS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02368 341 FunFam AT-hook motif nuclear-localized protein 1-like 131 261 - -
Viun4g02368 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 245 IPR005175 -
Viun4g02368 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 277 IPR039605 GO:0003680
Viun4g02368 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 251 - -
Viun4g02368 341 MobiDBLite consensus disorder prediction 27 68 - -
Viun4g02368 341 ProSiteProfiles PPC domain profile profile. 126 268 IPR005175 -
Viun4g02368 341 MobiDBLite consensus disorder prediction 303 341 - -
Viun4g02368 341 Gene3D - 131 261 - -
Viun4g02368 341 MobiDBLite consensus disorder prediction 27 51 - -
Viun4g02368 341 MobiDBLite consensus disorder prediction 315 333 - -
Viun4g02368 341 CDD DUF296 130 244 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02368 Viun-Chr4 39131730 39138413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02368 38 252 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 63.677 1.17e-86 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02368 - - gmx:102667678 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02368 4 39131730 39138413 Viun7g02424 7 28282839 28289366 ECH
Viun4g02368 4 39131730 39138413 Viun4g02368 4 39131730 39138413 ECH
Viun4g02368 4 39131730 39138413 Viun7g02424 7 28282839 28289366 PCT