Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02339 ATGGCTTCATACAACATTCTCATCTTCTTCATCCTTAACTTCCTCAACTTTGCAATCACCGAGCCACAAGATTATCCTCCACTCTACCAATATTGTTCCAGTGAACAAACCACCGACAATACCTCTCTCCAAGTTAATGTCAAAACCCTCCTTAGTAACTTGTCTTCTCTGTCCTCTGGCCACACCCAATACCACACCAATTTCTCATGCGCAAACCCCTCAGACTCTATCTATGGCTTGTTCATGTGTAGGGGTGACACTTCACCTCATCACTGTCAAAAATGCGTTCAAGGTGCCAAAACCAAACTATCCTTAGATTGTTCTTTGTCCAAGGAATCTGTCACTTGGTACGAAGAGTGCATGGTTCGGTATTCCACCAACTACTTCTTCTCCACCGTGGCCACAACCCAGTGCAACACCGGCAAGGTGGTCTCAAACCCTGAAAGCTTCATGCAGTTATATTTTCTGACCATGAACCAAACAGCAGATGAAGCAGCACGTGTTCCAGAGGTTCACAACAATACCAAGATGTTTTCTACGAAGCAAGCACACGTGTCTGGTTCTCACACCCTTTATTGTATGGCTCAATGCACACCAGACCTATCACCCAGTGATTGCAGAAGCTGCCTCGGTGAAGCCATAAGGGATGTTCCAAACTCTCCACAATGTTCTGGGGTGAGACTCGGAGGGAAAGTTCTTTATCCCAGTTGCAACATTAGGTATGAATCTTATCCTTTTTATCTCGTTCCACCAACAAACCCTTCATCTGAGCTTGTTCCCGAAACAAGAACCTCTCACCATGCAGATTTAACGTTTTCAGAAGACCCTCTTTATCTCTCTCACAATTGTTCAAGCAATAACAAAACCCTCGTTTCTAATAACGCTTCACAAATAAGCCTCAACACTCTCTTCTCTTACCTATCTTCCAACGCCACCAAAAGGAAATATTACGAAGCTGATGTGAACAGCACAGTTTATGGCCTCTTCATGTGCCGAGGTGATGTCTCCTATTGCGTGTGTGAAAAATGCGTCCAAAACGCAACACGGCAAATAGCATTAGATTGCAAGTCCTTCCAAGAGGGTATAGTTTGGTACAGCCACTGCATGGTTCGCTATTCCTTCAGAAAAATTTTTAGAACAGTGGAGACAAGTCCTAAGTTTTCGGAGCTGAATAAGACTGTCGGAATCGAGGAACAAAGTTTCTTCAGTGTTACGTTGGCGAAGACGCTGGATAAGGTTGCGGTTATGGCAGGGGACAGTGATGACAGATTTGGAAAATACTCAACGAAACTGAATGATCAACAAACCCTTTACACTCTTGCTCAATGCACGCATGATTTGCCTACTGACGATTGCAAGGGTTGCTTGGGAATTTTGATAGGAACAGAAATTCCATGGTCTGGTTTGAAAAGCATAGCGGGAAGAGTTCATTATCCTAGTTGCAATATCAGGTTTGAATTTTCCCAGTTTTACTTGGACAAACACCAGCAGCACAGTAAGGGCTTTTATTCATCTGCAAAACCAGGAAAGAAAAGAATCAATGTACGAAGAATTATATTAGTTACTGTGCCCACAATTATTTTGATGAATCTCTTGTTCGTGGCTTGGTATTTTCAAAGGAGAAATACAAGAAAGAGCCATGCGACTATTCTCAAGGAAAATTTTGGTCATGAAACTGCCACTTTGGAGCCCTTACACTTCAATTTGACAGCAATTGAGTTAGCTACTAATAATTTTTCCAACGAAAACAAGATAGGTAGAGGTGGATTTGGAGAAGTTTATAAGGGTATTCTTCCAAATGGACGTCGAATTGCGGTGAAAAGACTCTCAAAAAGTTCTAAACAAGGTGTTGCTGAGTTCAAGACTGAAGTTTTATTAATTGCAAAACTTCAACACAGAAATTTAGTAGAATTTATTGGTTTTTGTCTAGAGGAAGAAGAAAAGATACTTATCTATGAGTATGTGCCCAACAAAAGTCTCGATCACTTTTTATTTGATCCTCAACCACAAAAATCATTAAGTTGGTGTGAACGATATAAAATTATTGGAGGTATTGCACGAGGAATTGTTTATTTACATGAACATTCTCGACTTAAGATCATACATCGTGATCTTAAACCAAGTAATGTTCTACTTGATGAAAATATGACTCCAAAAATTTCAGATTTTGGCATTGCTAAAATTATTGAAATAAGTCAAGACCAAGAAAGCACAGATTTAATTGTTGGAACTTGTGGTTATATGTCTCCAGAGTATGCAATGTTTGGACAATTTTCGGAAAAATCAGACGTGTTTAGTTTTGGAGTAATGGTTTTAGAGATTATTACAGGAAGAAAGAATATATATTCTCCTGAACCACGTCGTATAGTTGATGGTCTCCTAAGTTATGTTTGGAAACAATGGAGGGCTCAAACACCATTAAGCATCTTGAACTCAAGTATTAAAGAAAATTATGCAGAAATTGAAGTTATAAAGTGTATTCAAATTGGTTTATTATGTGTTCAAGAAAGTCCCGATGTTAGACCAACAATGGTAACAATTGTTTCATATCTTGATGGTCACTTTAGTGAATTGCCAACTCCACAAAGACCAGCATTTTTCTTGCACGGAAGAATGGACTCAAAATCTATTGGGAGGAAATCTAGTTCTAGGAGATTTATGAATATTTCTACACCATTATCAATCAATGAAATGTCTACAAGTGAATGTTTTCCTCGCTAA 2721 0.3932 MASYNILIFFILNFLNFAITEPQDYPPLYQYCSSEQTTDNTSLQVNVKTLLSNLSSLSSGHTQYHTNFSCANPSDSIYGLFMCRGDTSPHHCQKCVQGAKTKLSLDCSLSKESVTWYEECMVRYSTNYFFSTVATTQCNTGKVVSNPESFMQLYFLTMNQTADEAARVPEVHNNTKMFSTKQAHVSGSHTLYCMAQCTPDLSPSDCRSCLGEAIRDVPNSPQCSGVRLGGKVLYPSCNIRYESYPFYLVPPTNPSSELVPETRTSHHADLTFSEDPLYLSHNCSSNNKTLVSNNASQISLNTLFSYLSSNATKRKYYEADVNSTVYGLFMCRGDVSYCVCEKCVQNATRQIALDCKSFQEGIVWYSHCMVRYSFRKIFRTVETSPKFSELNKTVGIEEQSFFSVTLAKTLDKVAVMAGDSDDRFGKYSTKLNDQQTLYTLAQCTHDLPTDDCKGCLGILIGTEIPWSGLKSIAGRVHYPSCNIRFEFSQFYLDKHQQHSKGFYSSAKPGKKRINVRRIILVTVPTIILMNLLFVAWYFQRRNTRKSHATILKENFGHETATLEPLHFNLTAIELATNNFSNENKIGRGGFGEVYKGILPNGRRIAVKRLSKSSKQGVAEFKTEVLLIAKLQHRNLVEFIGFCLEEEEKILIYEYVPNKSLDHFLFDPQPQKSLSWCERYKIIGGIARGIVYLHEHSRLKIIHRDLKPSNVLLDENMTPKISDFGIAKIIEISQDQESTDLIVGTCGYMSPEYAMFGQFSEKSDVFSFGVMVLEIITGRKNIYSPEPRRIVDGLLSYVWKQWRAQTPLSILNSSIKENYAEIEVIKCIQIGLLCVQESPDVRPTMVTIVSYLDGHFSELPTPQRPAFFLHGRMDSKSIGRKSSSRRFMNISTPLSINEMSTSECFPR 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02339 906 SMART serkin_6 579 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02339 906 Pfam Salt stress response/antifungal 138 244 IPR002902 -
Viun4g02339 906 Pfam Salt stress response/antifungal 398 486 IPR002902 -
Viun4g02339 906 Pfam Salt stress response/antifungal 32 126 IPR002902 -
Viun4g02339 906 Pfam Salt stress response/antifungal 283 373 IPR002902 -
Viun4g02339 906 ProSiteProfiles Gnk2-homologous domain profile. 131 246 IPR002902 -
Viun4g02339 906 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 900 - -
Viun4g02339 906 ProSiteProfiles Gnk2-homologous domain profile. 25 129 IPR002902 -
Viun4g02339 906 ProSitePatterns Protein kinases ATP-binding region signature. 585 607 IPR017441 GO:0005524
Viun4g02339 906 CDD STKc_IRAK 585 853 - -
Viun4g02339 906 FunFam cysteine-rich receptor-like protein kinase 10 655 858 - -
Viun4g02339 906 ProSiteProfiles Protein kinase domain profile. 579 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02339 906 Gene3D Transferase(Phosphotransferase) domain 1 655 859 - -
Viun4g02339 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Viun4g02339 906 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 539 654 - -
Viun4g02339 906 SUPERFAMILY Protein kinase-like (PK-like) 563 873 IPR011009 -
Viun4g02339 906 ProSiteProfiles Gnk2-homologous domain profile. 383 490 IPR002902 -
Viun4g02339 906 Gene3D Phosphorylase Kinase; domain 1 539 654 - -
Viun4g02339 906 FunFam Cysteine-rich receptor-like protein kinase 25 385 490 - -
Viun4g02339 906 Pfam Protein kinase domain 580 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02339 906 ProSiteProfiles Gnk2-homologous domain profile. 278 377 IPR002902 -
Viun4g02339 906 Gene3D - 386 490 IPR038408 -
Viun4g02339 906 Gene3D - 131 246 IPR038408 -
Viun4g02339 906 Gene3D - 26 129 IPR038408 -
Viun4g02339 906 Gene3D - 276 376 IPR038408 -
Viun4g02339 906 FunFam Cysteine-rich receptor-like protein kinase 25 133 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02339 Viun-Chr4 38987326 38990736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02339 271 906 Receptor kinase-like Gene Family AT4G05200 43.551 1.55e-164 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun4g02339 Pkinase 4.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02339 - - gmx:100807113 1065.45