Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02338 ATGATCCAAGAGCTCGTAAGCACATCCATGGCTTCCTGTAACATTTTCTTCCTCTTTATCCTTGTTAGCTTCCTCACTTTTGCAACTGCTCACGCACAGTCCGACTCCGACCCTGTCTATCTATTCCACAATTGCCCTATGGGCAACACAACAGATGGCAGCACCTTCCAATCCAATCTCAACATCCTACTCTCCTCCTTATCAGATAACGCCCCCGACAACAACGGATTCTACAACAACACTGTCTCTGGACAAAACCCCTCGGACTCTGTCTTTGGACTTTTCATGTGCAGGGGTGACGTCCCTTCTCAGCTTTGTCACCAATGTGTCCAAAATGCAACCCACCGATTATCCTCAGAGTGTTCCTTGGCTAAGCAAGCTGTGATTTGGTACGATGAGTGCACCGTTCGTTACTCCAACAACTCATTCTTCTCCACTTTCTCCACCAGACCTAGAATTGGCCTGTTGAACACTGCTAATATCTCAAACCAGGAAAGTTTCATGACTTTACTGTTTCAGACCATGAACAAAACTGCAAATGAAGCCGCTGCTGCTGTCGGTAACAAGTTTGCAACAAGGCAAGCATATATTTCTGGATTTCAGAACCTTTATTGTCTAGCTCAGTGCACTCCGGACTTGTCACTCAGTGACTGTAGAAGGTGTCTGAGTGGAGTGATAGGGGACCTTCCCTGGTGCTGCCAGGGGAAGCAGGGAGGGAGAGTTCTATACCCCAGCTGTAATGTTAGGTATGAACTTTACCCTTTCTATCGCTCCATAGAAGGACCTGAAGATTCAGGATTTTCAGAAGATCCAACTTATCTAAACCACAATTGCTCAACTAATGTAACTGCTGGCAGCACTTTCAAAATGTATGTAGAGACCCTCCTCACTTACATGTCCACCAATGCCACCGATGGAAAAATGTTTTATAAGGGCAGCGTGGAGAACATTGTGAATGGGCTCTTCATGTGCCAAGGTGGTCTTCCATCTGGGCTCTGTCAACAATGCGTCACCAAAGCAACCCTCCGAATATCCTCAGCGTGCAATTCGTTTCAAGAGGGTGTAATTTGGTACAGCCATTGCATGCTTCGCTATTCCTATCGCTATTTCTTCTCCCGAGTACAAAAAATCCCAACTTTTCAACTGTTGAAAGTCACCAGTGCCTCCAGCTCCGCCCCTGAGCAAGAGTTCTTCGCTTTTACACTATCAACTATGTTGGCTAATCTGGCGAAGGAGACACAGGATAGTGATGAGAGATATCTGACTAAATCATCGAAATTGAATGCTTTACAAACGCTTTATGCGTTAAGCCAATGTACGCAGGATTTATCTAGTGATGATTGTAGGGGCTGTTTGGAAGATATAAATGGAAATATCCCTTGGTCTCTCTTGGGAAGCGTGGGGGGAAGAGTTTTGAATCCCAGTTGCAGTCTCAGGTTTGAATTGTTCCAATTTTACGGCTTTGGTGACCAACCTCAACGGCCAAAATCAGGTGATCCTTCTCCATCTCCCCACAAAGGAAAAAGAAAAGTATCATTATTGCTAACAATGATCTTGATTATTGTACCCACAATTGTTTCAGTGATACTCTTCTTTTTGGTCTACTATTTGATAAAGAGTAAAGTAAGAAAAAGTGCTAAGACTATTCTAAAAGAAAATTTTGGTAATGAAAGTGTCACTTTAGAGCCATTGCAATTCAGTTTGACGGTAATTGAAGTTGCAACCAACAACTTCTCAAAGGAGAATAGGATTGGAAAAGGTGGATTTGGAGAAGTTTATAAGGGTATTCTCCTTGATGGACGACAAATCGCAGTAAAGAAACTGTCAAAAAGTTCTAAGCAAGGTGCAAATGAGTTCAAGAATGAAGTTTTATTGATAGCCAAACTTCAACATAGAAATCTTGTGACATTTATTGGTTTTTGTCTTGAAGATCAAAACAAAATTCTAATATATGAATATGTGCTGAACAAGAGTCTCGACTATTTTTTATTTGATTCTCAACAAGCAAATTTGTTAGGATGGTCTGATCGTTATAACATTATTGGAGGGATTGCTCGCGGAATTCTTTATTTACATGAATATTCTCGACTCAAAGTCATACATGGTGATCTTAAACCTAGTAATATCTTATTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGTTTGGCTAGAATTATTGAAATACATGAAGACCAAGCGAGTACAAATAGAATTGTTGGAACATATGGTTACATGTCTCCAGAATATGCGATGCTCGGACATTTTTCAGAAAAATCAGATGTTTTTAGTTTTGGTGTCATGGTTTTAGAAATTATCACTGGAAAAAGGAATGCAAATTCTTATGATCAACCATATGGTGTTGGTGATGGCCTGTCAAGTTATGTTTGGAGACAATGGAGGAGTGATAGCTTGTGTATATTAGACCCTAGTATTAAAGAAAAATATTGTGAAGAAGAAGTTATTAAATGCACTCAAATTGGTTTATTATGTGTTCAACAAAATCCTGATGCAAGACCAACAATGATGGAAGTTGTTTCATATTTTAGCAATCATTCGATTGAATTGCCAGATCCAGAAGAACCTGCATTCTTCTTGCATGGTAGAATGGATTCAAGACCAGTTCCACATTCCAAACAACATACCAATGGCCACACCCCATTTTCCATTAATGAAATGCCAACGAGTCAATTTCTTCCTCGATAG 2709 0.4031 MIQELVSTSMASCNIFFLFILVSFLTFATAHAQSDSDPVYLFHNCPMGNTTDGSTFQSNLNILLSSLSDNAPDNNGFYNNTVSGQNPSDSVFGLFMCRGDVPSQLCHQCVQNATHRLSSECSLAKQAVIWYDECTVRYSNNSFFSTFSTRPRIGLLNTANISNQESFMTLLFQTMNKTANEAAAAVGNKFATRQAYISGFQNLYCLAQCTPDLSLSDCRRCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRSIEGPEDSGFSEDPTYLNHNCSTNVTAGSTFKMYVETLLTYMSTNATDGKMFYKGSVENIVNGLFMCQGGLPSGLCQQCVTKATLRISSACNSFQEGVIWYSHCMLRYSYRYFFSRVQKIPTFQLLKVTSASSSAPEQEFFAFTLSTMLANLAKETQDSDERYLTKSSKLNALQTLYALSQCTQDLSSDDCRGCLEDINGNIPWSLLGSVGGRVLNPSCSLRFELFQFYGFGDQPQRPKSGDPSPSPHKGKRKVSLLLTMILIIVPTIVSVILFFLVYYLIKSKVRKSAKTILKENFGNESVTLEPLQFSLTVIEVATNNFSKENRIGKGGFGEVYKGILLDGRQIAVKKLSKSSKQGANEFKNEVLLIAKLQHRNLVTFIGFCLEDQNKILIYEYVLNKSLDYFLFDSQQANLLGWSDRYNIIGGIARGILYLHEYSRLKVIHGDLKPSNILLDENMIPKISDFGLARIIEIHEDQASTNRIVGTYGYMSPEYAMLGHFSEKSDVFSFGVMVLEIITGKRNANSYDQPYGVGDGLSSYVWRQWRSDSLCILDPSIKEKYCEEEVIKCTQIGLLCVQQNPDARPTMMEVVSYFSNHSIELPDPEEPAFFLHGRMDSRPVPHSKQHTNGHTPFSINEMPTSQFLPR 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02338 902 SUPERFAMILY Protein kinase-like (PK-like) 560 880 IPR011009 -
Viun4g02338 902 Pfam Salt stress response/antifungal 393 481 IPR002902 -
Viun4g02338 902 Pfam Salt stress response/antifungal 48 140 IPR002902 -
Viun4g02338 902 Pfam Salt stress response/antifungal 160 253 IPR002902 -
Viun4g02338 902 Pfam Salt stress response/antifungal 278 366 IPR002902 -
Viun4g02338 902 ProSitePatterns Protein kinases ATP-binding region signature. 584 607 IPR017441 GO:0005524
Viun4g02338 902 Pfam Protein kinase domain 579 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02338 902 Gene3D - 271 370 IPR038408 -
Viun4g02338 902 Gene3D - 380 485 IPR038408 -
Viun4g02338 902 Gene3D - 152 255 IPR038408 -
Viun4g02338 902 Gene3D - 37 143 IPR038408 -
Viun4g02338 902 ProSiteProfiles Protein kinase domain profile. 578 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02338 902 FunFam Cysteine-rich receptor-like protein kinase 25 379 485 - -
Viun4g02338 902 CDD STKc_IRAK 584 850 - -
Viun4g02338 902 SMART serkin_6 578 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02338 902 Gene3D Phosphorylase Kinase; domain 1 538 653 - -
Viun4g02338 902 MobiDBLite consensus disorder prediction 876 902 - -
Viun4g02338 902 ProSiteProfiles Gnk2-homologous domain profile. 379 485 IPR002902 -
Viun4g02338 902 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 264 877 - -
Viun4g02338 902 FunFam cysteine-rich receptor-like protein kinase 10 654 857 - -
Viun4g02338 902 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 539 653 - -
Viun4g02338 902 ProSiteProfiles Gnk2-homologous domain profile. 38 143 IPR002902 -
Viun4g02338 902 ProSiteProfiles Gnk2-homologous domain profile. 270 370 IPR002902 -
Viun4g02338 902 MobiDBLite consensus disorder prediction 880 902 - -
Viun4g02338 902 ProSiteProfiles Gnk2-homologous domain profile. 149 255 IPR002902 -
Viun4g02338 902 FunFam Cysteine-rich receptor-like protein kinase 25 151 255 - -
Viun4g02338 902 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Viun4g02338 902 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 38 142 - -
Viun4g02338 902 Gene3D Transferase(Phosphotransferase) domain 1 655 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02338 Viun-Chr4 38966565 38971455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02338 268 902 Receptor kinase-like Gene Family AT4G05200 40.937 9.37e-163 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun4g02338 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02338 - - gmx:100798426 1234.17