Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02333 ATGCCATCCCGACAACTCTCCACCTCATCAGAAACACCGCCACGTCATCACCACCACCACTTTTTCATACCTTTCCTCGCCGTCACCCTCTCAGCCTTCTCCCTCCTCCTTCTCCTCCTCTTCCTCTGCCTACACCGCATCGTCACCCGCAAACGCGCCACCCACCCGCCTCCTCCTCCTTCCTCCTCCCCCCCGCACCGCCTCTCCTTCTCCGTCCTCCGCCGCGCCACCAATTCCTTCTCCTCCCGCCTGGGCCACGGCGGCTTCGGTCCCGTATTCGCCGGCACCCTCGCCGGAGCCCCCGTCGCCGTCAAGCTGATGGACTCTGCCTCTTCTCACCAGGGCGAGCGCGAGTTCCACAACGAGCTTTTCTTCGCCTCCAAGCTCCTCTCTCCCCACGTCATCACCGCCACGCACTTCTCCTCTGACCCCAAACGACGCCGCTTCCTCTTGGTCTACGAGCTCATGCAAAACGGTAACCTCCAAGACGCGCTTTTGCACCGGAAGTGCCCCGAGCTCTCAAACTGGAACACCCGCTTCTCAATTATTCTCAACATAGCCAAAGGAATTCACTTTCTCCACTCCTGTGACCCCCCTGTTATCCACGGCGACATAAAGCCCAGTAACGTTTTGCTCGATCGCGATTTCTCGCCCAGAATTGGCGACTTCGGGTTAGCGAGGTTGAGCTCGGAGCTTCCGAGGTTTGAAATTGAGGTTCTGGAGTGTGGTAGTGTTAATAACGATGAAGAGAAGCGGAAGATGAAGGAGGAGGAGGTTGATGATTGCGGATCGGTGGCGAGTACTCACAGTGTTTTTATGGAAGAAGGTAGCTTGGGGGTGGAGCAATCTCCTTCGCCAGAGACTGCGGCGATGATGGCGATGACTTCGCCGGAGACGGGATTGGCGGTGGCAGGGGCGTCGCCGGGGTTTGAGAAGGAGGATGCGAAGAAGATGAACGGGAAAGCGTTGAAGAGTAATTCGGTGAGGGATTGGTGGTGGAAGCATGAGAATGACGTTGGGAGTGGGGAGGGTAAGAAGGTTAAGGATTATGTGATGGAGTGGATTGGGAGGGACGTGAATAAGGAGAGGGTGAAGGGTGGAATTGAATATGGGGATGTGGAGATGGGGAAGGAAGAGGCAAAGAAGAAGAAGAAGAAGAGAAGAGGGAAGGAAATGGAATGGTGGGAGTCAATGGAAGAGGAGAAGTTTGACGGGGCTGTGAAGGGGAAGAGAAGGACCGTGAGGGAGTGGTGGAAAGATGAGTGTTTTGAGGAGAACGAAAAGAAGAACAAGAAGAAGAAGAAGAAAAAGGGTGGGGGTGTAAAGAGTGATGATATTGAGAATGGTGATGATTGGTGGGTGAGTGATGATGCATTGGATAAGAGGAAGGGAAAGAGTAGGAGCAGAAACAACCGTGGGAACATGGATTGGTGGATGGATGGATTGAGTGGTGAGTTATGGAGAGGAAGGAGGAATAACAGCTTTGATTCTGCAAGTGGGGAGATTCCAAAGAGTGGTGGTGTTAGCAGTACTCCTAGTATGAGGGGAACTGTGTGTTATGTTGCTCCTGAATGTGGCTATGGTGGTGATGTGACTGAGAAATCTGATGTGTATAGCTTTGGGGTGTTGTTGCTTGTGATAATTTCTGGGCGGCGACCACTTCAAGTGAGTGGTTCTCCCTTGTCTGAGTTTCAGAGAGCGAATCTACTCTCCTGGGCACGCCATTGTGCAAGAAATGGGAAGCTTTTTGAGTTGGTGGATGAGTCTCTGCAGTTGTTGGATAAAGAACAGGCTCTTCTCTGCATCAAGGTGGCTTTGGTTTGTCTGCAGAAATCACCTACTCGTCGTCCTTCAATGAAGGAGGTTGTGGGGATTCTGAGTGGGGAGTTAGAACCACCCCAATTGCCTGTTGAGTACTCTCCTTCAACCCCTTCTCGCTACCCCTTCAAGTCTAGGAGAAAAGGAAGGCATTCCTGGAGTGATGTTCATATTTGGGTATACCATGGCCTATGTTGTTGTTGCGAGGACTAA 2031 0.5249 MPSRQLSTSSETPPRHHHHHFFIPFLAVTLSAFSLLLLLLFLCLHRIVTRKRATHPPPPPSSSPPHRLSFSVLRRATNSFSSRLGHGGFGPVFAGTLAGAPVAVKLMDSASSHQGEREFHNELFFASKLLSPHVITATHFSSDPKRRRFLLVYELMQNGNLQDALLHRKCPELSNWNTRFSIILNIAKGIHFLHSCDPPVIHGDIKPSNVLLDRDFSPRIGDFGLARLSSELPRFEIEVLECGSVNNDEEKRKMKEEEVDDCGSVASTHSVFMEEGSLGVEQSPSPETAAMMAMTSPETGLAVAGASPGFEKEDAKKMNGKALKSNSVRDWWWKHENDVGSGEGKKVKDYVMEWIGRDVNKERVKGGIEYGDVEMGKEEAKKKKKKRRGKEMEWWESMEEEKFDGAVKGKRRTVREWWKDECFEENEKKNKKKKKKKGGGVKSDDIENGDDWWVSDDALDKRKGKSRSRNNRGNMDWWMDGLSGELWRGRRNNSFDSASGEIPKSGGVSSTPSMRGTVCYVAPECGYGGDVTEKSDVYSFGVLLLVIISGRRPLQVSGSPLSEFQRANLLSWARHCARNGKLFELVDESLQLLDKEQALLCIKVALVCLQKSPTRRPSMKEVVGILSGELEPPQLPVEYSPSTPSRYPFKSRRKGRHSWSDVHIWVYHGLCCCCED 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02333 676 Gene3D Transferase(Phosphotransferase) domain 1 64 245 - -
Viun4g02333 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Viun4g02333 676 MobiDBLite consensus disorder prediction 428 447 - -
Viun4g02333 676 ProSiteProfiles Protein kinase domain profile. 78 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02333 676 SUPERFAMILY Protein kinase-like (PK-like) 55 648 IPR011009 -
Viun4g02333 676 SMART serkin_6 78 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02333 676 Gene3D Transferase(Phosphotransferase) domain 1 494 632 - -
Viun4g02333 676 PANTHER OS07G0586332 PROTEIN 1 655 IPR044576 -
Viun4g02333 676 Pfam Protein tyrosine and serine/threonine kinase 512 624 IPR001245 GO:0004672|GO:0006468
Viun4g02333 676 Pfam Protein kinase domain 82 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02333 Viun-Chr4 38932208 38934767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02333 504 623 Receptor kinase-like Gene Family AT3G58690 35.714 8.76e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Viun4g02333 Pkinase 4.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02333 - - gmx:100794183 1040.8