Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02331 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGTCCCCACCAGCAGCAGCAACACAAAATCTCTCAAGATCTGATTCTGGATGATTATGCTTCTCTGGATGATAATGTTTCTGCCAAAAAATTCTCCACATCCCAACCACAGAATCTTTTCTACCACCCAGATAAAAACAATCATCATGACTCTAACCAACATATGAAGAAGATGATTCACAAGGAGATCGAAAGGCAAAGGAGACAAGAAATGGCTACCTGCTATGCCTCTCTCAGATCCCTTCTCCCTCTTCACTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAACTACATAAAGCACATGCAGAACAATATCAAAGAGCTTGTTGCAAAGAGAGATGAACTGAAGAAGCTTTCCAACTACAGCAGCATGGATAATAGCCATGAGGGTTTGCATACATCTTGCAACTTTACTGTCCATGAGAATAATGGTGTTATAGGAATCGAAATCACCAGTGGCTTCAGAGAGGAAAGGCCTAAAGTTTCCAAGTTACTGCAGTTACTGATTCAAGAAGGTCTTGAAGTTGTAAGTTTCCTTTCATCAGAAGTGAATGGTCGATTGCTCCACAGTGTGCAGTGTGAGGTAAACAATTCCTACTGTGTAGATCTATCTGAGCTGAGAAGGAAAGTTTCGAAAGCATTTCCAGCGTTTAGATGTTCTGACTAA 732 0.4112 MFPLQRGNELVIQFSNSPHQQQQHKISQDLILDDYASLDDNVSAKKFSTSQPQNLFYHPDKNNHHDSNQHMKKMIHKEIERQRRQEMATCYASLRSLLPLHFIKGKRSISDHMNEAVNYIKHMQNNIKELVAKRDELKKLSNYSSMDNSHEGLHTSCNFTVHENNGVIGIEITSGFREERPKVSKLLQLLIQEGLEVVSFLSSEVNGRLLHSVQCEVNNSYCVDLSELRRKVSKAFPAFRCSD 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02331 243 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 61 234 - -
Viun4g02331 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 123 IPR011598 GO:0046983
Viun4g02331 243 FunFam Transcription factor bHLH126 63 151 - -
Viun4g02331 243 Gene3D - 62 153 IPR036638 GO:0046983
Viun4g02331 243 Pfam Helix-loop-helix DNA-binding domain 72 124 IPR011598 GO:0046983
Viun4g02331 243 SMART finulus 77 129 IPR011598 GO:0046983
Viun4g02331 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 139 IPR036638 GO:0046983
Viun4g02331 243 CDD bHLH_AtORG2_like 72 142 - -
Viun4g02331 243 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02331 Viun-Chr4 38924259 38925837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02331 68 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 46.821 1.72e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun4g02331 HLH 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02331 - - gmx:100796473 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02331 4 38924259 38925837 Viun4g02331 4 38924259 38925837 ECH