Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02330 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGTCCCCACCAGCAGCAGCAACACAAAATCTCTCAAGATCTGATTCTGGATGATTATGCTTCTCTGGATGATAATGTTTCTGCCAAAAAATTCTCCACATCCCAACCACAGAATCTTTTCTACCACCCAGATAAAAACAATCATCATGACTCTAACCAACATATGAAGAAGATGATTCACAAGGAGATCGAAAGGCAAAGGAGACAAGAAATGGCTACCTGCTATGCCTCTCTCAGATCCCTTCTCCCTCTTCACTTCATCAAGTGTGATATTTTTCAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAACTACATAAAGCACATGCAGAACAATATCAAAGAGCTTGTTGCAAAGAGAGATGAACTGAAGAAGCTTTCCAACTACAGCAGCATGGATAATAGCCATGAGGGTTTGCATACATCTTGCAACTTTACTGTCCATGAGAATAATGGTGTTATAGGAATCGAAATCACCAGTGGCTTCAGAGAGGAAAGGCCTAAAGTTTCCAAGTTACTGCAGTTACTGATTCAAGAAGGTCTTGAAGTTGTAAGTTTCCTTTCATCAGAAGTGAATGGTCGATTGCTCCACAGTGTGCAGTGTGAGGTAAACAATTCCTACTGTGTAGATCTATCTGAGCTGAGAAGGAAAGTTTCGAAAGCATTTCCAGCGTTTAGATGTTCTGACTAA 747 0.4083 MFPLQRGNELVIQFSNSPHQQQQHKISQDLILDDYASLDDNVSAKKFSTSQPQNLFYHPDKNNHHDSNQHMKKMIHKEIERQRRQEMATCYASLRSLLPLHFIKCDIFQGKRSISDHMNEAVNYIKHMQNNIKELVAKRDELKKLSNYSSMDNSHEGLHTSCNFTVHENNGVIGIEITSGFREERPKVSKLLQLLIQEGLEVVSFLSSEVNGRLLHSVQCEVNNSYCVDLSELRRKVSKAFPAFRCSD 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02330 248 FunFam Transcription factor bHLH126 63 156 - -
Viun4g02330 248 Coils Coil 118 145 - -
Viun4g02330 248 Gene3D - 62 158 IPR036638 GO:0046983
Viun4g02330 248 CDD bHLH_AtORG2_like 72 147 - -
Viun4g02330 248 Pfam Helix-loop-helix DNA-binding domain 72 129 IPR011598 GO:0046983
Viun4g02330 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 128 IPR011598 GO:0046983
Viun4g02330 248 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 61 239 - -
Viun4g02330 248 SMART finulus 77 134 IPR011598 GO:0046983
Viun4g02330 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 143 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02330 Viun-Chr4 38924053 38925837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02330 68 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 45.506 4.78e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun4g02330 HLH 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02330 - - gmx:100796473 374.4