Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02329 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGTCCCCACCAGCAGCAGCAACACAAAATCTCTCAAGATCTGATTCTGGATGATTATGCTTCTCTGGATGATAATGTTTCTGCCAAAAAATTCTCCACATCCCAACCACAGAATCTTTTCTACCACCCAGATAAAAACAATCATCATGACTCTAACCAACATATGAAGAAGATGATTCACAAGGAGATCGAAAGGCAAAGGAGACAAGAAATGGCTACCTGCTATGCCTCTCTCAGATCCCTTCTCCCTCTTCACTTCATCAAGTGTGATATTTTTCAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAACTACATAAAGCACATGCAGAACAATATCAAAGAGCTTGTTGCAAAGAGAGATGAACTGAAGAAGCTTTCCAACTACAGCAGCATGGATAATAGCCATGAGGGTTTGCATACATCTTGCAACTTTACTGTCCATGAGAATAATGGTGTTATAGGAATCGAAATCACCAGTGGCTTCAGAGAGGAAAGGCCTAAAGTTTCCAAGTTACTGCAGTTACTGATTCAAGAAGGTCTTGAAGTTGTAAGTTTCCTTTCATCAGAAGTGAATGGTCGATTGCTCCACAGTGTGCAGTGTGAGATCTATCTGAGCTGA 678 0.4115 MFPLQRGNELVIQFSNSPHQQQQHKISQDLILDDYASLDDNVSAKKFSTSQPQNLFYHPDKNNHHDSNQHMKKMIHKEIERQRRQEMATCYASLRSLLPLHFIKCDIFQGKRSISDHMNEAVNYIKHMQNNIKELVAKRDELKKLSNYSSMDNSHEGLHTSCNFTVHENNGVIGIEITSGFREERPKVSKLLQLLIQEGLEVVSFLSSEVNGRLLHSVQCEIYLS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02329 225 FunFam Transcription factor bHLH126 63 156 - -
Viun4g02329 225 Pfam Helix-loop-helix DNA-binding domain 72 129 IPR011598 GO:0046983
Viun4g02329 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 143 IPR036638 GO:0046983
Viun4g02329 225 Coils Coil 118 145 - -
Viun4g02329 225 CDD bHLH_AtORG2_like 72 147 - -
Viun4g02329 225 Gene3D - 62 158 IPR036638 GO:0046983
Viun4g02329 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 128 IPR011598 GO:0046983
Viun4g02329 225 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 61 221 - -
Viun4g02329 225 SMART finulus 77 134 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02329 Viun-Chr4 38924046 38925837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02329 68 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 46.296 6.86e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun4g02329 HLH 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02329 - - gmx:100796473 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02329 4 38924046 38925837 Viun4g02329 4 38924046 38925837 ECH
Viun4g02329 4 38924046 38925837 Viun7g03351 7 35416987 35418493 PCT