Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02328 ATGTCGAATGCAATGGATGAAGACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGGAAACTCTGCAACAACCTCAGATCGCTTCTGCCTTTAGAATATGTTAAGGGAAAACGTTCAACCTCAGATCATGTTCATGAAGCTATGAATTACATCAACCACCTTCAAGATAAGGTAAAGCAATTGCAAGAAAAGAGGGATGCGTTGTTGAAGGTGTCTAATTTGAGTAGCATTGTTCCTGAGAATGAAAGCTCTTGTGCAACTCATCTTCCACCTTTGGTTCTTGTTCATCCTTTCCCTGGTGGCCTTGAGATTATTTGCAGTCATAGCTTCAGGAAAAGTGTGTTTCCCATGTCAAGATTATTGGACATTCTGCATAAAGAAGGACTTAACGTGGTCAACACTACTTCCATCAGAAGAGATGGTAGATTCATACACACCATACAATCAGAGGATTCCAACTGTTCTAATATGATGGACACTGATTACTCTGAACTGCAAATAAAGCTTGTGGAGGCATTGTCATCTTCAAGTTTGCAAGAGACTTTGCCTGAACCTGAAAATTGCTAA 585 0.4017 MSNAMDEDKKWMHKETERQRRQEMGKLCNNLRSLLPLEYVKGKRSTSDHVHEAMNYINHLQDKVKQLQEKRDALLKVSNLSSIVPENESSCATHLPPLVLVHPFPGGLEIICSHSFRKSVFPMSRLLDILHKEGLNVVNTTSIRRDGRFIHTIQSEDSNCSNMMDTDYSELQIKLVEALSSSSLQETLPEPENC 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02328 194 SMART finulus 14 66 IPR011598 GO:0046983
Viun4g02328 194 Pfam Helix-loop-helix DNA-binding domain 10 61 IPR011598 GO:0046983
Viun4g02328 194 Coils Coil 50 77 - -
Viun4g02328 194 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 174 - -
Viun4g02328 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 60 IPR011598 GO:0046983
Viun4g02328 194 FunFam Transcription factor bHLH126 1 88 - -
Viun4g02328 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 77 IPR036638 GO:0046983
Viun4g02328 194 CDD bHLH_AtORG2_like 9 81 - -
Viun4g02328 194 Gene3D - 1 91 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02328 Viun-Chr4 38903930 38905401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02328 9 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 40.909 6.20e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun4g02328 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02328 - - pvu:PHAVU_004G124200g 309.301