Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02327 ATGAACTTGAAGCAATACTGCTGTTTCCTCTCAGATGAAGGCCAAAGCAAATATCAGAACAAGAACCATAGGGATTATCCATGGGAAACGTACACCTTGAAGGAGTTGCTCAGAGCCACAAACAACTTTCATCAAGATAATAAGATCGGAGAGGGTGGATTTGGAAGTGTTTATTTTGGTCGAACAAGTAAAGGCGTTCAGATTGCAGTGAAGCGATTGAAGACAATGAGTGCTAAAGCAGAAATGGAGTTTGCAGTGGAAGTGGAAGTATTAGGAAGAGTGAGGCATAAGAATTTGTTGGGGTTGAGGGGATTTCATGCAGGTGGAGATGAAAGATTGATTGTGTATGATTACATGCCAAATCATAGCTTGCTCACACATTTGCATGGTCCACTTGCAAAGGAATGTCAATTAGATTGGACAAGAAGAATGAGCATAGCAATTGGAGCTGCTGAAGGTTTATTGTATTTGCACCATGAGTCAACTCCTCACATCATACACAGAGATATAAAAGCGAGTAATGTTCTTCTGGACTCTGAATTCCAAGCCAAGGTTGCTGATTTTGGTTTTGCAAAGCTTGTACCAGATGGAGTGACTCATTTGACCACAAAGGTTAAAGGCACACTGGGATATTTGGCACCAGAATATGCCATGTGGGGAAAAGTTTCTGAGAGTTGTGATGTTTACAGCTTTGGAATTTTACTGTTGGAGATTGTGAGTGCCAAGAAACCCATTGAGAAATTTCCTGGAGGAGTGAAAAGGGACATTGTTCAATGGGCCACACCATTTGTGAACAAAGGTCTCTTCAGCAATATTGCAGATCCAAAATTGAAGGGGAAATTTGATTTGCAGCAGTTGAAAAATGTGATCACAATAGCTCTTAGATGCACTGATAATAGTGCAGATAAGAGGCCTAACATGAAAGAGGTGGTGGATTGGCTCAAGAATGGTGTAGGGAGCACTTAA 966 0.411 MNLKQYCCFLSDEGQSKYQNKNHRDYPWETYTLKELLRATNNFHQDNKIGEGGFGSVYFGRTSKGVQIAVKRLKTMSAKAEMEFAVEVEVLGRVRHKNLLGLRGFHAGGDERLIVYDYMPNHSLLTHLHGPLAKECQLDWTRRMSIAIGAAEGLLYLHHESTPHIIHRDIKASNVLLDSEFQAKVADFGFAKLVPDGVTHLTTKVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSAKKPIEKFPGGVKRDIVQWATPFVNKGLFSNIADPKLKGKFDLQQLKNVITIALRCTDNSADKRPNMKEVVDWLKNGVGST 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02327 321 Gene3D Transferase(Phosphotransferase) domain 1 119 318 - -
Viun4g02327 321 SMART serkin_6 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02327 321 CDD STKc_IRAK 49 316 - -
Viun4g02327 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Viun4g02327 321 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Viun4g02327 321 FunFam PTI1-like tyrosine-protein kinase At3g15890 15 118 - -
Viun4g02327 321 Pfam Protein kinase domain 43 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02327 321 ProSiteProfiles Protein kinase domain profile. 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun4g02327 321 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 20 316 - -
Viun4g02327 321 Gene3D Phosphorylase Kinase; domain 1 8 118 - -
Viun4g02327 321 FunFam PTI1-like tyrosine-protein kinase At3g15890 119 321 - -
Viun4g02327 321 SUPERFAMILY Protein kinase-like (PK-like) 25 316 IPR011009 -
Viun4g02327 321 PIRSF ILK 12 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02327 Viun-Chr4 38893983 38895703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02327 31 310 Trihelix Transcription Factor Family AT1G68690 45.070 4.71e-83 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Viun4g02327 Pkinase 6.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02327 - - vra:106757402 626.32