Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02302 ATGGGTAAGGGGGGAATGTCAATTGGTGATAATGGAGAAGACAAAGAAGAGAATATGGCTGCTTGGCTTCTGGGTATAAACAATCTCAAGATTCAACCTTTCAAGCTTCCTGTTCTAGGACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTTAAGACACTTAGGTGTGCACACTTTATAGTTAAGGAACCAATGGTTATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAATCAGGTAACAAATTTGGTGCCTGGTGACCGTGTGGCGCTTGAACCTGGGATCAGTTGCTGGCGATGCGGCCACTGCAAACAGGGTCGATATAATTTGTGTGATGAAATGAAGTTTTTTGCTACTCCACCAGTTCATGGTTCCCTGGCTAATCAGATAGTGCATCCTGCAGACCTATGTTTTAAGCTTCCAGACAATGTGAGCCTAGAGGAGGGGGCCATGTGTGAACCCTTAAGTGTTGGTCTTCATGCTTGTAGAAGAGCTAATATTGGACCAGAAACAAATGTGTTGGTCATGGGAGCTGGACCCATAGGACTTGTTACACTGCTTGCAGCTCGTGCTTTTGGGGCACCCAGGACTGTCATTGTGGATGTTGATGACTATCGTTTATCTGTTGCAAAATCTCTTGGTGCAGATGACATTGTTAAAGTCTCAACAAACATTCAGGATGTGGCTGAAGAAATTGAGCTGATACAAAAGGTTATGGGAGCTGCTATAAATGTTACCTTTGATTGTGCTGGTTTTGACAAAACCATGTCTACAGCACTGGGTGCTACTCAGCCCGGTGGCAAAGTTTGCCTAGTGGGAATGGGACATTCTGAAATGACCGTCCCACTCACCCCTGCTGCAGCAAGGGAAGTTGATGTGATTGGAGTTTTTCGCTATATGAACACATGGCCTCTTTGTCTTGAGTTTCTAAGGAGTGGAAAAATCGATGTGAAACCACTTATAACTCACAGGTTTGGGTTCTCTCAAAAGGAAGTGGAAGAAGCCTTTGAAACAAGTGCTCGTGGTGGTACTGCCATCAAGGTCATGTTCAATCTTTAG 1095 0.4466 MGKGGMSIGDNGEDKEENMAAWLLGINNLKIQPFKLPVLGPHDVRVRMKAVGICGSDVHYLKTLRCAHFIVKEPMVIGHECAGIIEEVGNQVTNLVPGDRVALEPGISCWRCGHCKQGRYNLCDEMKFFATPPVHGSLANQIVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLVMGAGPIGLVTLLAARAFGAPRTVIVDVDDYRLSVAKSLGADDIVKVSTNIQDVAEEIELIQKVMGAAINVTFDCAGFDKTMSTALGATQPGGKVCLVGMGHSEMTVPLTPAAAREVDVIGVFRYMNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFNL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02302 364 SMART PKS_ER_names_mod 25 362 IPR020843 GO:0016491
Viun4g02302 364 FunFam Sorbitol dehydrogenase 169 309 - -
Viun4g02302 364 CDD sorbitol_DH 20 363 IPR045306 GO:0016616
Viun4g02302 364 Gene3D - 29 350 - -
Viun4g02302 364 PANTHER SORBITOL DEHYDROGENASE 16 364 - -
Viun4g02302 364 SUPERFAMILY GroES-like 18 190 IPR011032 -
Viun4g02302 364 Gene3D - 169 309 - -
Viun4g02302 364 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 328 IPR036291 -
Viun4g02302 364 Pfam Zinc-binding dehydrogenase 192 322 IPR013149 -
Viun4g02302 364 Pfam Alcohol dehydrogenase GroES-like domain 41 152 IPR013154 -
Viun4g02302 364 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02302 Viun-Chr4 38614003 38617912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02302 31 297 Monolignol Biosynthesis Gene Families AT4G37980 26.619 6.95e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02302 K00008 - gmx:100791559 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02302 4 38614003 38617912 Viun4g02302 4 38614003 38617912 ECH