Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02301 ATGGACGTGGATGGGGGCAGCAAGCGTGTGTACAACCGTCTCGGTGGGGACGCGAAGCACCAGAAAGTGTGTTTCCACTGGCAAGCGGGCAAGTGCAATCGCTACCCGTGCCCCTTCCTGCACAGCGAATTGCCCGCATCTTCCCACGCCAACGGGGCCTCCTCGAAGCGTGCGTACGACAATACGGGCTTATCGGGATTCTCGGGCCAGCGCGGACGCCCCAATTTCAACAACACGTGGGGCCGTGGCGGGGGGCGCGGCGGCGGCGGCGGTAGAGGGGCGGTGGTGAAGGCGGAAAAAGTTTGCAATTATTGGATTCAGGGGAATTGTAATTATGGAGAGAGGTGTAAGTTCCTTCACTCTTGGAAAGTGGGAGATGGGTTTTCTTTGCTGACACAGCTCGAAGGGCATCAGAAGGCTGTGAGTGCAATCGCTTTTCCCTCTGGTTCAGATAAGCTGTATACTGGAAGCACTGACGAGACGGCTAGGATTTGGGACTGCCAGTCTGGAAAGTGTGTAGGTGTGATCAATCTTGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAATTTTGTCAAGGCCTGGAACACTCAAAATTTAATGGAGCTAAGTCTAAATGGCCCCGTTGGACAAGTTTATGCTCTTGTTGTAAGCAATGATATGCTCTTTGCCGGTACACAGGATGGATCTATATTGGCATGGAAGTTTAATGTAGGTAATAACTGCTTCGAGCCAGCTGCATCACTTAAAGGTCATTCTCGTGGTGTTGTTTCATTAGTTGTTGGTGCTAATAGACTTTACTCTGGGTCAATGGACAATACAATAAGAGTATGGAACCTTGAAACCTTGCAATGTATACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGAACAATTCCTTTTATCTTGTTCCTTGGACAAAACTGTGAAGGTATGGTATGCTACAGAAAGCGGAAACTTGGAAGTCACATATACTCACAATGAGGAACATGGTATACTTACCCTATGTGGGATGCATGACTCACAAGGCAAGCCCATTTTGTTGGGTGCTTGCAATGACAACACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGGGGTAAGATATTAACTAAACAAGAGGTACGAGCAATCCAGATAGGACCTAACGGCATATTCTTCACCGGAGATGGTACTGGTGAAGTAAGAGTGTGGAATTGGTCAGCGGAGGCAACCGCTACCGTCCAATAA 1275 0.4894 MDVDGGSKRVYNRLGGDAKHQKVCFHWQAGKCNRYPCPFLHSELPASSHANGASSKRAYDNTGLSGFSGQRGRPNFNNTWGRGGGRGGGGGRGAVVKAEKVCNYWIQGNCNYGERCKFLHSWKVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARIWDCQSGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLMELSLNGPVGQVYALVVSNDMLFAGTQDGSILAWKFNVGNNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCIQTLTEHTSVVMSVLCWEQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGILTLCGMHDSQGKPILLGACNDNTVRLYDLPSFAERGKILTKQEVRAIQIGPNGIFFTGDGTGEVRVWNWSAEATATVQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02301 424 Pfam WD domain, G-beta repeat 130 166 IPR001680 GO:0005515
Viun4g02301 424 Pfam WD domain, G-beta repeat 253 287 IPR001680 GO:0005515
Viun4g02301 424 Pfam WD domain, G-beta repeat 292 326 IPR001680 GO:0005515
Viun4g02301 424 PANTHER - 98 420 IPR044715 -
Viun4g02301 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 296 IPR001680 GO:0005515
Viun4g02301 424 ProSitePatterns Trp-Asp (WD) repeats signature. 274 288 IPR019775 -
Viun4g02301 424 Gene3D - 93 121 - -
Viun4g02301 424 ProSiteProfiles Zinc finger C3H1-type profile. 97 123 IPR000571 GO:0046872
Viun4g02301 424 SUPERFAMILY CCCH zinc finger 98 121 IPR036855 GO:0046872
Viun4g02301 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 290 - -
Viun4g02301 424 SMART c3hfinal6 98 122 IPR000571 GO:0046872
Viun4g02301 424 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Viun4g02301 424 MobiDBLite consensus disorder prediction 63 89 - -
Viun4g02301 424 FunFam Zinc finger CCCH domain-containing protein 48 214 422 - -
Viun4g02301 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 134 166 - -
Viun4g02301 424 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Viun4g02301 424 SMART WD40_4 250 287 IPR001680 GO:0005515
Viun4g02301 424 SMART WD40_4 331 374 IPR001680 GO:0005515
Viun4g02301 424 SMART WD40_4 377 414 IPR001680 GO:0005515
Viun4g02301 424 SMART WD40_4 127 166 IPR001680 GO:0005515
Viun4g02301 424 SMART WD40_4 290 327 IPR001680 GO:0005515
Viun4g02301 424 SMART WD40_4 206 243 IPR001680 GO:0005515
Viun4g02301 424 Pfam Zinc finger domain 102 120 - -
Viun4g02301 424 MobiDBLite consensus disorder prediction 63 77 - -
Viun4g02301 424 FunFam Zinc finger CCCH domain-containing protein 48 122 212 - -
Viun4g02301 424 Gene3D - 252 423 IPR015943 GO:0005515
Viun4g02301 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 175 IPR001680 GO:0005515
Viun4g02301 424 Gene3D - 122 251 IPR015943 GO:0005515
Viun4g02301 424 PRINTS G protein beta WD-40 repeat signature 153 167 IPR020472 -
Viun4g02301 424 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Viun4g02301 424 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Viun4g02301 424 SUPERFAMILY WD40 repeat-like 128 416 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02301 Viun-Chr4 38597307 38605023 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02301 226 414 Miscellaneous Gene Families AT5G08390 26.633 2.33e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun4g02301 WD40 8.6e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02301 - - gmx:100775542 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02301 4 38597307 38605023 Viun4g02301 4 38597307 38605023 ECH