Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02298 ATGGCTTCTTCTGCAACACTGTTTCTGCATTACCCTCTTCGTCTTCTTCTCCATTCTCCTCTTTCTACCAAAATTACCAAACCACCCCTCTTACCGCGACCCCTTCTTTTCCCTCGCCCCCTCCACTCGCGCTTCCTCCTCCCTCCGCCACGCGCCTACGTTGCCGCGCTCGCATCCGACCCGAATTTCGGAGACCCGGATCCGAAGCTTTTCGGGTCGGGTTCGGAGAAGGCAAAACCGCAAAACGTGATCACGTGGAGCCTCCTCTGCTCGCTTCTCATGAACCACAAACTGCGCCTGCTTCTCGTGGCCGCCACGCTCTTCGCCAGCTCCACCTGTACCCTATCCATGCCCCTCTTTTCCGGACGGTTTTTTGAAGTTCTAATTGGAGCTAGACCTGAACCGTTGTGGAAGCTGCTAACTCAAATTGGACTTCTGTATGCCTTGGAGCCACTTGCAACTATCATTTTTGTTATAAACATGAACATAGTGTGGGAGAAAATTATGTCGACATTAAGAGCTCAGATCTTCGGAAGAATATTGATTCAAAAGATTGAGTTTTTTGACAAATACAAGGTTGGTGAACTCACAGGTTTGTTAACATCTGATTTGGATTCTCTTAAAAATATTGTCAGTGAGAATGTCTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGTCATTGGAACCATATTCATACTTTTTTCTTTATCACCGCAACTGGCACCTATTCTAGGTGTTCTGATGCTCTCAGTTTCCATTTCAATAGCTATCTACAAGAGATCTACATTGCCAGTTTTTAAAGCACATGGGATGGTCCAAGCATCTATATCTGACTGTGTGACTGAAACGTTTTCTGCCATTCGAACAGTAAGATCCTTTGGTGGTGAAAAGCGCCAAATGTTCTCTTTTGCTAATCAGGTTCTATCTTTCCAATCAAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAATGAATCTTTAACTAGAGTTGCAGTTTATATTTCTTTAATAGCATTATACTGTCTTGGAGGAAGCAAGGTTAAAGCGGGTGAACTCTCTGTTGGAACCATGGCATCTTTTATTGGATATACTTTCACTTTAACATTTGCTGTTCAAGGACTGGTTAATACTTTTGGAGATCTTCGTGGAACTTTTGCTGCTGTTGAGAGGATCAACTCTGTTTTTTCTGGAGTTCAAGTTGACGATGCCCTGGCTTATGGCTTAGAAAGAGAACTGAGACAAAAAACAGTGGATGATGAAAACTATAAATGGGTCTTGTCCAATATTTCTACCGAGAATAACCAAAAAAATTATTTTCACTTTATGTCAGCTCTTAAAACATCAAGCAATTTATTCAGCTTAGCTTGGTCCGGAGATATTTGCCTTGAAGATGTATATTTCTCTTATCCATTAAGGCCGGATGTGGAAATCTTACGTGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTGGTGGGTCCAAGTGGTGCAGGGAAAAGTACAGTAGTCCAGCTATTGTCTCGTTTTTATGAGCCAACAAGTGGCTGTATAACGGTTGCAGGAGAGGATGTCCGAACATTTGACAAGAGTGAATGGGCCCGGGTTGTCTCTATTGTAAATCAAGAGCCTGTTTTGTTTTCGGTGTCTGTTGGAGAAAACATTGCATATGGGCTTCCAGATGAAGATGTCTCTAAAGAAGATGTCATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCACTACCACAGGGCTATGATACACTTGTTGGTGAGCGTGGAGGCCTATTGAGTGGAGGACAGAGACAGAGAATTGCTATAGCCCGCGCTCTCCTAAAGAATGCTCCCATCCTTATACTTGATGAGGCTACCAGTGCCCTGGATGCTGTGAGTGAGCGCTTGGTCCAGGAAGCTCTCAACCATTTGATGAAGGGAAGAACCACATTAGTAATAGCCCACCGATTAAGCACAGTCCAAAATGCATATCAAATTGCAGTGTGTTCTGAGGGGAGGGTTGCAGAATTAGGCACTCATTTTGAACTATTGGCTAAGAATGGCCAATATGCTTCACTGGTTGGCACACAAAGGCTTGCCTTTTTTGAATAA 2121 0.4333 MASSATLFLHYPLRLLLHSPLSTKITKPPLLPRPLLFPRPLHSRFLLPPPRAYVAALASDPNFGDPDPKLFGSGSEKAKPQNVITWSLLCSLLMNHKLRLLLVAATLFASSTCTLSMPLFSGRFFEVLIGARPEPLWKLLTQIGLLYALEPLATIIFVINMNIVWEKIMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLDSLKNIVSENVSRDRGFRALSEVIGTIFILFSLSPQLAPILGVLMLSVSISIAIYKRSTLPVFKAHGMVQASISDCVTETFSAIRTVRSFGGEKRQMFSFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVFSGVQVDDALAYGLERELRQKTVDDENYKWVLSNISTENNQKNYFHFMSALKTSSNLFSLAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGPSGAGKSTVVQLLSRFYEPTSGCITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKEDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQEALNHLMKGRTTLVIAHRLSTVQNAYQIAVCSEGRVAELGTHFELLAKNGQYASLVGTQRLAFFE 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02298 706 Gene3D - 459 702 IPR027417 -
Viun4g02298 706 Pfam ABC transporter 479 630 IPR003439 GO:0005524
Viun4g02298 706 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 459 703 - -
Viun4g02298 706 Pfam ABC transporter transmembrane region 101 371 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g02298 706 SUPERFAMILY ABC transporter transmembrane region 89 392 IPR036640 GO:0005524|GO:0016020
Viun4g02298 706 ProSitePatterns ABC transporters family signature. 602 616 IPR017871 GO:0005524|GO:0016887
Viun4g02298 706 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 69 702 IPR039421 -
Viun4g02298 706 CDD ABC_6TM_TAP_ABCB8_10_like 107 392 - -
Viun4g02298 706 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 101 384 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun4g02298 706 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 461 699 IPR003439 GO:0005524
Viun4g02298 706 Gene3D ABC transporter type 1, transmembrane domain 73 397 IPR036640 GO:0005524|GO:0016020
Viun4g02298 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 700 IPR027417 -
Viun4g02298 706 CDD ABC_MTABC3_MDL1_MDL2 461 700 - -
Viun4g02298 706 SMART AAA_5 488 662 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02298 Viun-Chr4 38566312 38573075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02298 458 703 Calmodulin-binding Proteins AT2G36910 56.225 5.34e-76 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02298 K05657 - gmx:100791034 1209.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02298 4 38566312 38573075 Viun4g02298 4 38566312 38573075 ECH