Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02296 ATGTGTGGATTGTACCATTTTTCCTCCGAGCTCTCCACTTCCTTCGATTCTTCATCGCCACCGTCCGTCGCATTCTCCGATGAGGAGGTTCTGCTGGCAGTAAGGCATCCCAAGAAGAGGGCGGGCCGGAAGAAGTTCCGGGAGACGCGCCACCCAGTGTACCGCGGAGTGAGGAGGAGGAACTCCGACAAATGGGTCTGTGAGGTGAGGGAGCCAAACAAAAAGAGCAGGATTTGGCTGGGGACTTTCCCCACGCCGGAGATGGCGGCGCGGGCACACGACGTGGCGGCGATGGCCCTCAGGGGCCGGTACGCCTGTCTCAACTTCGCCGACTCCAGGTGGCGGTTACCAGCCCCTGCCAGTGCCAGCGCCAAAGATATTCAAAAAGCAGCAGCAGAAGCTGCTGAAGCTTTCAGACCAGACCAAACTTCACAAAACAGTAACACAAGACAAGAGTGCCTGGAGGCGGCGACAAAAACAACGTTGGAACAAGGTCTGTTTTACATGGAGGAAGATCAGGAAGAGCAAGTGTTGGATATACCTGAGCAGCTCAGGAACATGGTGCTCATGTCCCCGTCACATTTCTTAGGGTATGAGTATGAAGATGCTGGTTTAGAAGCTCAAGATACTGAGGTGTCACTGTGGAGTTTCTCAATCTAA 660 0.5424 MCGLYHFSSELSTSFDSSSPPSVAFSDEEVLLAVRHPKKRAGRKKFRETRHPVYRGVRRRNSDKWVCEVREPNKKSRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSRWRLPAPASASAKDIQKAAAEAAEAFRPDQTSQNSNTRQECLEAATKTTLEQGLFYMEEDQEEQVLDIPEQLRNMVLMSPSHFLGYEYEDAGLEAQDTEVSLWSFSI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02296 219 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Viun4g02296 219 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Viun4g02296 219 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Viun4g02296 219 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Viun4g02296 219 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 216 IPR045277 GO:0003700
Viun4g02296 219 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Viun4g02296 219 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Viun4g02296 219 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Viun4g02296 219 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Viun4g02296 219 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02296 Viun-Chr4 38534014 38535016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02296 32 217 AP2-EREBP Transcription Factor Family AT5G51990 57.576 1.34e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun4g02296 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02296 - - vra:106763827 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02296 4 38534014 38535016 Viun7g03322 7 35204159 35205652 ECH
Viun4g02296 4 38534014 38535016 Viun4g02296 4 38534014 38535016 ECH
Viun4g02296 4 38534014 38535016 Viun7g03322 7 35204159 35205652 PCT