Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02288 ATGACCTCCATGACACCTTCGCGGGTGACAGGAGGCTTAACCCAATCATCTTCACATTCTGGAATTTTCTTTCAAGGAGATGGGCAGTCACAGAGTGTAGTTAACACTCACTTAAGTTCATCTATTGTTAACTCATCTAGCACAGTTACGGGAGCCCGTCGAACAAACCTGGGTCCGGTTTCGGGTGATATGAATAATGTAGTTTTGAACAGTGTAGCAAACTCTGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCTCTCTCTGGTGGCCCCCATTTGCAGCGAAGTGCCAGTGTTAACGCGGACTCATACTTACGATTACCTGCCTCACCCATGTCATTTACGTCAAACAATATTAGTATTTCAGGCTCATCAGTGATCGATGGTTCCTCTGTAGTACAGCAGAGCTCTCATCAAGATCATAATGTTCAACAATTGCAGCAGAATCAGCAGCAGCTGCAGGGTGCTGCAAGTGCTACATCGTTGCCTGCGTCTCAAACTGGTCCGTCTTCCCTTCATATGGGTGCACATGTCCCTGGATCTTTCATTCATGATCCAAATAATGTATCTCAGCTGTCCAAAAAACCTAGAATGGATATCAAACAGGAAGATATAATGCAGCAGCAGCAGCAGCAGGTTATGCAACAGATTCTTCAGAGACAAGATTCCATGCAATTGCAGGGTCGAAATCCACAGTTACAGGCTTTATTTCAACAACACCAGAGACTGAGACAGCAACAAATCTTTCAGTCAATGCCCCAATTACAGCGAATGCACTTGCAGCAACAACATCAACAACAGCAACAACTACAACAACAACAAATGCAATATAGGCAGCAATTACAGCAACAAGTGATGCAGCCCTCTTCTGCTGTCAAGCGCCCAGGCGACAATGGTGTCAGTGGGGTTTGTGCTCGTCGATTGATGCAATATCTCTATCATCAAAGGCAACGGCCAAATGATAATAGTATTGCTTATTGGAGAAAATTTGTGGCTGAATATTACTCTCCTCGTGCAAAGAAACGGTGGTGCTTGTCGTTATATAACAATGTTGGCCATCATGCACTTGGTGTTTTCCCCCAAGCAGCTACGGATGCATGGCAATGCGACATATGTGGTTGTAAATCTGGAAGGGGATTTGAGGCAACTTATGAAGTATTACCTAGACTTAATGAAATCAAATTTGGTGGCGGAGTGATTGATGAACTTTTGTTTCTGGACTTGCCACGTGAAATAAGATTTTCTTCTGGTGCAATGATGTTAGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGAGTTGTTCGTGAAGGTCAACTTCGCATCATATTCACTCAAGATTTGAAGATATTATCTTGGGAATTCTGTGCAAGGCAGCATGAAGAACTTCTTCCTCGAAGGTTGGTTACACCACAGGTCAACCATTTAGTAAATGTAGCTCAAAAGTGCCAGAGTACTATTGCTGAAAGTGGAGCAGATGGAGTTTCTCAACAAGATTTGCAATCAAAAAGCAGCACGGTATTGACAACAGGGCGCCAGCTTGCAAAGATGTTGGAGTTGCAATCGCTTAATGACTTGGGTTTTTCTAAAAGATATGTGAGATGTTTGCAGATTGCGGAGGTTGTCAACAGCATGAAAGACCTAATAGATATCTGTGACGAGCAAAACGTTGGGGCAATAGAGAGTTTGAAAAGTTATCCTCTACTAACAAATGCCTCAAAGCTCCAGATGCAAAAGATGCAGGAAATGGAGCAGCTGGCAAGTGCTCATGGTCTGCCAACTGATAGAAACACACTCAATAAGCTGATGGCAATGAATCCTGGATTGAACAACCAGATAAACAACGGTCAAAATGTGGTTAATCGTGGTGCTTTGAGTGGGTCAGCCCATTCAGCAGTACTTACAAACTACCAAAATCTTCTCATGAGGCAAAATTCAATGAATTCTAGCCCTGGCTCCCTTCAGCGCGAAGGATCCTCATTCAATAATTCTAACCCGAGTCCCTCTTCTTCTATGCAAGGAGCTGGTCCTTCTTTAGTTCCAGGCTCAATGCAAAACTCGCCTGTAGGTGGCTTCCCAGGTTCCCATCAAACCCTGCAGCAGCAGCTGCCGCTGCCGCAACTCCTCCAACAGCGCACATTAAGTGCAAATGGTTTACTGCAACAAAATCATCCACAGGGGTCCCAAGGAAATCAAGCTCTACAGCAGCAACAGCAGATGATCCATCAACTAGTGAAGGAAGTGTCAAATAACAATGGGGGAATGCAATCACAGCCTCTTGTTGGACCCATTGCAAATGGGAATATGGCAAAGAATGCATTGGGTTTTGGGGGCAATACTCCATCTATAAGCGGAGGAGGTTCTGCCAGTGTTCCACGAAACAATGGACCCATTTCGAGGAATAATAGCTTCAAAACAGCTTCAAACAGTGATTCTTCTGCCGCTGCTGGCAACAGTGGATTCAACCCAAGAACATCTGATATGCCGCAAAGTCTTCATTTGCAAGATGTGGTTCAGGACATTGGCCATGAGTTCGCGGATAACCCCTTCTTTAACAGTGATCTTGATGATGACATGGGTTTTGGCTGGAAGGCATGA 2622 0.4432 MTSMTPSRVTGGLTQSSSHSGIFFQGDGQSQSVVNTHLSSSIVNSSSTVTGARRTNLGPVSGDMNNVVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNADSYLRLPASPMSFTSNNISISGSSVIDGSSVVQQSSHQDHNVQQLQQNQQQLQGAASATSLPASQTGPSSLHMGAHVPGSFIHDPNNVSQLSKKPRMDIKQEDIMQQQQQQVMQQILQRQDSMQLQGRNPQLQALFQQHQRLRQQQIFQSMPQLQRMHLQQQHQQQQQLQQQQMQYRQQLQQQVMQPSSAVKRPGDNGVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKKRWCLSLYNNVGHHALGVFPQAATDAWQCDICGCKSGRGFEATYEVLPRLNEIKFGGGVIDELLFLDLPREIRFSSGAMMLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARQHEELLPRRLVTPQVNHLVNVAQKCQSTIAESGADGVSQQDLQSKSSTVLTTGRQLAKMLELQSLNDLGFSKRYVRCLQIAEVVNSMKDLIDICDEQNVGAIESLKSYPLLTNASKLQMQKMQEMEQLASAHGLPTDRNTLNKLMAMNPGLNNQINNGQNVVNRGALSGSAHSAVLTNYQNLLMRQNSMNSSPGSLQREGSSFNNSNPSPSSSMQGAGPSLVPGSMQNSPVGGFPGSHQTLQQQLPLPQLLQQRTLSANGLLQQNHPQGSQGNQALQQQQQMIHQLVKEVSNNNGGMQSQPLVGPIANGNMAKNALGFGGNTPSISGGGSASVPRNNGPISRNNSFKTASNSDSSAAAGNSGFNPRTSDMPQSLHLQDVVQDIGHEFADNPFFNSDLDDDMGFGWKA 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02288 873 Pfam LIM-domain binding protein 312 572 IPR029005 -
Viun4g02288 873 Coils Coil 265 285 - -
Viun4g02288 873 MobiDBLite consensus disorder prediction 135 202 - -
Viun4g02288 873 MobiDBLite consensus disorder prediction 792 838 - -
Viun4g02288 873 MobiDBLite consensus disorder prediction 135 177 - -
Viun4g02288 873 MobiDBLite consensus disorder prediction 652 706 - -
Viun4g02288 873 PANTHER LIM DOMAIN-BINDING PROTEIN 59 859 IPR029005 -
Viun4g02288 873 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02288 Viun-Chr4 38366122 38372817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02288 307 581 C2H2 Transcription Factor Family AT1G43850 58.182 4.69e-104 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02288 - - pvu:PHAVU_004G121400g 1350.11