Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02259 ATGGAAGGTCGTGGTGAAATGGGTATGATGGGAGAGAGTTTTGATACGAGTAATTTGCTGGGGAGGATCAGGGATGATGACTATGAAAGTCGCTCTGAAAGTGATAATTTTGATGGTGGATCTGGTGATGAACAAGATGTTGGCGATGATCAACCACAAAGAAAGAAGAAGAAATATCACAGACACACTCCTCAACAGATTCAGGATCTTGAAGCATTCTTTAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAACCGATCTCAGCAAGAGGCTTGGCTTGGAGAACAAGCAAGTGAAGTTCTGGTTTCAAAATCGACGAACCCAGATGAAGACACAATTGGAGAGGCACGAGAACATGGTTCTGAAGCAGGAGAATGACAAGCTTCGAGCTGAGAATGGTGTGATGAAGGAAGCTTTGGCCAATCCTATCTGCAACAACTGTGGTGGTCCAGCGATTCCTGGTCAGATTTCATTGGAGGAGCACCAGACAAGGATTGAAAATGCTCGATTGAAGGATGAACTGAACCGAATCTGCACACTAGCAAACAAGTTCCTGGGGAGGTCCCTTTCATCACTGGCGAGTCCTATTTCTCTGCCACCCACAAATTCTGGTCTTGACCTTGCTATTGGAAGAAATGGAATTGGTGGTTCAAGCAATTTTGGCATGCCCGTGCCAATAGGGTTTGATATGGGTGATGGAGCTCTAGGCTCTTCAGCTGCAATGGCAGGTATGGCTGCTCGAGCACCACTGGGAATGATGGGAAACGAAATCCATCTCGAAAGATCTATGCTCATAGACATTGCCATAAATGCTATGGATGAACTGGTTAAGATGGCTCGACAAGATAACCCTCTTTGGATCAAGAGTTCTGATGGTAGGAATGAAGTTCTAAACTTTGATGAATATGCAAGAATATTTCCTACTTTTGTTGGATCAAAACCTGCTGGGTATGTGTCTGAAGCCACAAGAGCAACTGGAGTTGTATTAGCCAGCAGCTTGGGCCTTGTGGAAACTTTCATGGATGTGGATCGATGGTCTGAGATGTTTTCATATATGGTGGCTAGTGCTTGCCCTTTGGATGTGTTATCTGGTGGCACAAACGGAACGAGAAATGGAGCTTTGCAAGTGATGTTAGCTGAACTTCAATTGCTTTCCCCACTGGTCCCTACTCGTCAAATGAGTTTGCTCAGGTTCTGCAAGCAACATGCTGAAGGTGTATGGGTTGTGGTCGATGTTTCCATTGATCTTATCCGTAATGGTTCCAGTTCGCATCCATCAATGAGTTGCAGGAGGCTTCCTTCTGGTGTTGTTATTCAGGATATGCCCAATGGTTTGTCCAAGATTACCTGGGTTGAACACACCCAGTATGATGAGAGTGTGATCCACCAACTTTGTCGTCCATTGGTTAGTTCTGGCATTGGCTTTGGTGCACAGAGATGGATTTCATCTCTCCTAAGACAGTGTGAATGCTTGGCAATCCTCATGACCCCTCCTGGTCCATCTGATGACCCTACAGTCCTTAGCCAATCAAATAGGAGAAGCGTGTTGAAGCTGGCGCAGCGCATGATTGAGTATTTCTGCTCAGGGATTTGTGCTTCATCTGCACGCAAGTGGGATGTTCTTCACGTTGGTAATATTGCTGATGACATGAAAATCATGGCTCGAAAAATTGTGGATGATTCAAATGAGGGTGCTGGAATTGTGTTGAGTGCTTCAACTACTATGTGGTTGCCAGTGCCTCGACAAAGGGTGTATGATTTCTTACGTAATGAACAGCTGAGAGGGGAATGGGACATACTGTCCAAAGGTGGTCCAATGAAAGAGATGGTCCATGTTCCTAAAGGGCAAGACCCTGGAAACTGTGTTTCCATTCTTCATCATATTAACAATGAGAGCAATGTGCTGTTTCTACAAGAGTCATGGAATGATGCATCTGGCTCAATGGTGGTGTTTTCTCCAATCAACATGCAGTCTTTGAACATGATGATGAGCTGTGGAGATTCATCATTTGTGGGTCTTCGTCCTTCAGGATTTGTTGTTCTGCCAGATGACAACAATGAAGGTGGTAGCTGTTTGCTGACCGTTGGATTACAAATGCTGCAGAATGACAACCATTCAGCCAAGTTCACAATTGAGTCAGTTCAAACTGTTAATTCTCTCCTTTCATGCACCATTCAGAAGGTGAAGGAAACATTTGGAGTTTCATGA 2211 0.4473 MEGRGEMGMMGESFDTSNLLGRIRDDDYESRSESDNFDGGSGDEQDVGDDQPQRKKKKYHRHTPQQIQDLEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMVLKQENDKLRAENGVMKEALANPICNNCGGPAIPGQISLEEHQTRIENARLKDELNRICTLANKFLGRSLSSLASPISLPPTNSGLDLAIGRNGIGGSSNFGMPVPIGFDMGDGALGSSAAMAGMAARAPLGMMGNEIHLERSMLIDIAINAMDELVKMARQDNPLWIKSSDGRNEVLNFDEYARIFPTFVGSKPAGYVSEATRATGVVLASSLGLVETFMDVDRWSEMFSYMVASACPLDVLSGGTNGTRNGALQVMLAELQLLSPLVPTRQMSLLRFCKQHAEGVWVVVDVSIDLIRNGSSSHPSMSCRRLPSGVVIQDMPNGLSKITWVEHTQYDESVIHQLCRPLVSSGIGFGAQRWISSLLRQCECLAILMTPPGPSDDPTVLSQSNRRSVLKLAQRMIEYFCSGICASSARKWDVLHVGNIADDMKIMARKIVDDSNEGAGIVLSASTTMWLPVPRQRVYDFLRNEQLRGEWDILSKGGPMKEMVHVPKGQDPGNCVSILHHINNESNVLFLQESWNDASGSMVVFSPINMQSLNMMMSCGDSSFVGLRPSGFVVLPDDNNEGGSCLLTVGLQMLQNDNHSAKFTIESVQTVNSLLSCTIQKVKETFGVS 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02259 736 SUPERFAMILY Homeodomain-like 38 113 IPR009057 -
Viun4g02259 736 Pfam START domain 268 491 IPR002913 GO:0008289
Viun4g02259 736 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Viun4g02259 736 FunFam Homeobox-leucine zipper protein HDG1 41 129 - -
Viun4g02259 736 MobiDBLite consensus disorder prediction 1 64 - -
Viun4g02259 736 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Viun4g02259 736 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Viun4g02259 736 CDD START_ArGLABRA2_like 262 490 - -
Viun4g02259 736 SMART HOX_1 55 117 IPR001356 GO:0003677
Viun4g02259 736 Coils Coil 107 127 - -
Viun4g02259 736 Gene3D - 43 129 - -
Viun4g02259 736 CDD homeodomain 56 113 IPR001356 GO:0003677
Viun4g02259 736 SUPERFAMILY Bet v1-like 261 491 - -
Viun4g02259 736 MobiDBLite consensus disorder prediction 19 38 - -
Viun4g02259 736 SUPERFAMILY Bet v1-like 513 700 - -
Viun4g02259 736 ProSiteProfiles START domain profile. 258 494 IPR002913 GO:0008289
Viun4g02259 736 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 51 732 IPR042160 -
Viun4g02259 736 SMART START_1 267 491 IPR002913 GO:0008289
Viun4g02259 736 Gene3D - 266 476 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02259 Viun-Chr4 38275468 38280047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02259 1 733 Homeobox Transcription Factor Family AT3G61150 51.900 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun4g02259 START 1.3e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02259 K09338 - gmx:100784656 1145.57