Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02255 ATGGGTTTTCTCCGGCGACTCTTCGGCGGCGCCAAGAAACACCACCACACTCCACCACCCTCCGAAGGCTCAGCTCCTAAACCCGCCAAGGACAAGAAAACGTGGAACTTCGTGAAACAGAGTACGAGGTACAAGTCCACCACGTTGTCCTCACTTAACAACTTTGACCCTTCTACTTCTTCTGCTCCTTTCTCCGACTCCTTAGACGCCAACAAGCATGCCATCGCCGTTGCCGCCGCTACCGCCGCCGTTGCAGAGGCCGCTCTCGCTGCCGCCCACGCAGCTGCCGAGGTTGTCAGATTGACCAGCGGCAATGGGCCTCCCGCCGGAAGACCCGCCCCGGCGTATCATCCCAGGCTGGCGGCTGAGAATACAGCAGCCGCCGTGAAGATTCAGTCGGCGTTCAGAGGTTACTTGGCAAGGAGGGCTCTGAGAGCACTTAAGGCATTGGTGAAGTTGCAGGCATTGGTGAGAGGCCACATTGTGAGAAAGCAAACTACAGATATGCTAAGGCGCATGCAGACTTTGGTGCGATTGCAGTCTCGGGCACGTGCCACACGTGGGAACTTGTCTGATAATATGCATTCCTTCAAGTCTTCACTGTCTCATTACCCTGTCCCTGATGATTATCAGCACTCACTTTACGGCTATAGTACGAAATTTGATGGATCTGTTCTGAAGAGATGCAGTTCCAACGCAAATTTTAGGGACGTTGATTTAGAGAAAGCTCGGTTTGGTTCCCACTGGCTAGACAATTGGATGGAAGAAAACTCTTGGAGCCAAACCAGAGATGGTTCATTGAAAACCTGCCACCTTGATGATGAAAAGAGTGACAAGATTCTTGAAGTGGATACTTGGAAGCCACACTTGAACTCACACCATTATTTGTCTTCTGATTACAACAACAATGAGAATTTTGTGGCATATGAGTCTCCATCAAAGCGTTCTTCAAGGGAGGGTGTACTACCCTTTGGCTCTCTGAAGCTTCACAGAGGAAAAGAGGAAGCATCTTTGAGAAATGTTGAGGATAGTCCTCAAGCATTCTCTGCTTCATCTAGACATGGAAGTGGCTCAAGGAGAGGTCCATTCACACCAACTAAGAGTGAGTGTGCATGGAGTGTGTTCAGTGGGTATTCTGGTCATCCCAATTACATGTCAAATACTGAATCTTCAAGAGCCAAGGTTAGGTCACACAGTGCTCCAAGGCAGAGAATTGAGTTTGAGAGATATGGTTCCACAAGAAGGTCTCTACAGGGTTTCTGGGATGCAGGACCTAGTTCTGATAGGGATTCTACCACAAACACCACCAGCTTGAACAGAATTGGGAGTGCCAATTTAAGGTGA 1344 0.494 MGFLRRLFGGAKKHHHTPPPSEGSAPKPAKDKKTWNFVKQSTRYKSTTLSSLNNFDPSTSSAPFSDSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGNGPPAGRPAPAYHPRLAAENTAAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTTDMLRRMQTLVRLQSRARATRGNLSDNMHSFKSSLSHYPVPDDYQHSLYGYSTKFDGSVLKRCSSNANFRDVDLEKARFGSHWLDNWMEENSWSQTRDGSLKTCHLDDEKSDKILEVDTWKPHLNSHHYLSSDYNNNENFVAYESPSKRSSREGVLPFGSLKLHRGKEEASLRNVEDSPQAFSASSRHGSGSRRGPFTPTKSECAWSVFSGYSGHPNYMSNTESSRAKVRSHSAPRQRIEFERYGSTRRSLQGFWDAGPSSDRDSTTNTTSLNRIGSANLR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02255 447 SMART iq_5 123 145 IPR000048 GO:0005515
Viun4g02255 447 SMART iq_5 146 167 IPR000048 GO:0005515
Viun4g02255 447 MobiDBLite consensus disorder prediction 342 365 - -
Viun4g02255 447 Pfam IQ calmodulin-binding motif 148 165 IPR000048 GO:0005515
Viun4g02255 447 Pfam IQ calmodulin-binding motif 125 145 IPR000048 GO:0005515
Viun4g02255 447 Gene3D - 123 176 - -
Viun4g02255 447 MobiDBLite consensus disorder prediction 425 447 - -
Viun4g02255 447 PANTHER IQ-DOMAIN 5-RELATED 35 421 - -
Viun4g02255 447 MobiDBLite consensus disorder prediction 335 365 - -
Viun4g02255 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 169 IPR027417 -
Viun4g02255 447 MobiDBLite consensus disorder prediction 418 447 - -
Viun4g02255 447 MobiDBLite consensus disorder prediction 15 34 - -
Viun4g02255 447 ProSiteProfiles IQ motif profile. 148 175 IPR000048 GO:0005515
Viun4g02255 447 MobiDBLite consensus disorder prediction 8 34 - -
Viun4g02255 447 ProSiteProfiles IQ motif profile. 124 152 IPR000048 GO:0005515
Viun4g02255 447 Pfam Protein of unknown function (DUF4005) 344 416 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02255 Viun-Chr4 38233162 38237855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02255 1 419 IQD Protein Family AT5G62070 47.836 1.55e-60 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02255 - - vum:124834771 728.398