Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02248 ATGGCTCCGCCGCCTCCGGTGGAACACAACGCTGACTCCACTACCACCGCCTCTGCCGCCGCAGACTCTCAGAGATCCATTCCCACACCGTTTCTCACCAAAACCTTTCAACTCGTCGACGACCAATCCATCGACGATGTTATCTCCTGGAACGACGACGGATCAACGTTCATCGTCTGGAACCCTACCGTCTTCGCCAGAGACTTGCTTCCTAAATATTTTAAACACAACAATTTCTCCAGCTTCGTTCGCCAGCTCAACACTTACGGATTCAGGAAGGTCGTACCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGCCGTGGCGAGAAGCGGCTTCTGAGCGAAATTCAACGGCGGAAGATCTCGTTGCCGGCGCCTTCGACGTCGCTGTCTCCGACGGCTCCGGCGACGGTTGCTGTTCCGTCGCCGATGCCGTTGACTGCGATTCCGATCATTTCGCCGTCGAACTCCGGCGAGGAGCAGGTGATATCATCGAACTCGTCACCGTCGCTCGCACCGGCGGAGCTCATCGACGAGAACGAGAGGCTTAGGAAAGAGAACGTTCAGTTGACGAAAGAGCTCTCGGAGATGAGATCGCTCTGCAATAATATTTATGCTCTCATGTCAAATTACGCGAACGCCAACGGTAACGGTAACGGAAGTTACCAAACGGACGGCGGTGCTGGTGGCGCTCAGGGAAGTAGGGAGTCCGGCATGACTGCGGTGAAGCCGCTCGATTTGATGCCGACGAAACGGATCTCCGGGGAGGACGCAGCGGAGTTGAATCCGAAGCTGTTCGGTGTGGCGATTGGAGCGAAGCGCGCGAGGGAAGGAGGAGGAAGCGGTGGAGATTGTGGAGAAGAAGGAGGTAGAGCAAATAAAGATACGCTGCTGCGTCTTCATCATCCGGGTCCTGCGGACGTAAAATCTGAACCGTTGGATTGCCAAAACCACCGCGAGAATCAGGAAACGCCGTGGTTGAGTCAGTGTCACATAGCAAATCAGAGGGTTTGTCATTGA 1023 0.5513 MAPPPPVEHNADSTTTASAAADSQRSIPTPFLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLSEIQRRKISLPAPSTSLSPTAPATVAVPSPMPLTAIPIISPSNSGEEQVISSNSSPSLAPAELIDENERLRKENVQLTKELSEMRSLCNNIYALMSNYANANGNGNGSYQTDGGAGGAQGSRESGMTAVKPLDLMPTKRISGEDAAELNPKLFGVAIGAKRAREGGGSGGDCGEEGGRANKDTLLRLHHPGPADVKSEPLDCQNHRENQETPWLSQCHIANQRVCH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02248 340 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun4g02248 340 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun4g02248 340 SUPERFAMILY "Winged helix" DNA-binding domain 28 120 IPR036390 -
Viun4g02248 340 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 211 IPR027725 -
Viun4g02248 340 FunFam Heat stress transcription factor B-4 23 121 - -
Viun4g02248 340 MobiDBLite consensus disorder prediction 9 24 - -
Viun4g02248 340 Gene3D - 23 121 IPR036388 -
Viun4g02248 340 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun4g02248 340 Coils Coil 181 201 - -
Viun4g02248 340 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun4g02248 340 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun4g02248 340 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun4g02248 340 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02248 Viun-Chr4 38160328 38161964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02248 5 340 HSF AT5G62020 47.740 3.37e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun4g02248 HSF_DNA-bind 6.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02248 K09419 - gmx:100812267 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02248 4 38160328 38161964 Viun4g02248 4 38160328 38161964 ECH
Viun4g02248 4 38160328 38161964 Viun7g03299 7 35015627 35017156 PCT