Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02228 ATGAACATCGTACTACTCCTCTTTCTCCTCGCATCATCGCTTTCTTCAGTTTCCTGCACCGCACGCGCTCAATCTCTCTCACCGGAAACGCTCAATGACGCCGCCGTCAAAGCAACGCTTTTCTTGTCACTCGTCATCTTCGTTTTCGCCCTTCTCATCACCGCATTCTGCTTCGTCTTCATCCGCTGCATATCCAACCGAAACCACGCGCTTCCGCAAGTCACGCGCGGACTCGACCCGCGCGTGCTCGCCACGTGCCCCGTCATGTCATACTCCGAGCTCAAACTGAATCACCCCAAAGCGGCACAAAACGCCCCGTTTCAATGCGCGGTGTGTCTGGCGGACTTCGCCGACGACGAATCGCTCCGGCTGCTGCCCAAGTGCGGTCACGTGTTCCACGCGCGCTGCATCGAGGCGTGGCTGGCTGCGCACGTGACCTGTCCCGTGTGCCGCAGCGACGTGAGCGCGGAAACAGGGGATGCATGTGCGCGGCACGTGCTGGAGGAGGAAGATTCTGTAAGGGACTTTGGTGTTCTTGTTAGGTCGCATTCTACGGGTCACTCTCTAGAGGGCTTTTCCATCAAAGTTCCTGAGGAGGTGAAGAAGAAGGTTCTAGAAGATGGCGAATGTGGAAATTCCATGAAGATGAATCGTTCAGCCAGTTACGACGTCGTTGTGGGGATTGAAGAAGGGGGTGTAGGTAGCAATACTGCTGCTGCAACTAATAATAATAACAACAGTTGGGTTTTGTGGACTTCGCAACCTATTGATTCTGGTGGTTCGGGGATTCCGAAGTTTTGGGGTGCTTCAATGGTGAGAGAAGATAAAGAAAAAGGGAAAGTGAAAGAGTTTGAGGGAAGAACATTTTTTGATTGTGAAGTTTGA 885 0.5288 MNIVLLLFLLASSLSSVSCTARAQSLSPETLNDAAVKATLFLSLVIFVFALLITAFCFVFIRCISNRNHALPQVTRGLDPRVLATCPVMSYSELKLNHPKAAQNAPFQCAVCLADFADDESLRLLPKCGHVFHARCIEAWLAAHVTCPVCRSDVSAETGDACARHVLEEEDSVRDFGVLVRSHSTGHSLEGFSIKVPEEVKKKVLEDGECGNSMKMNRSASYDVVVGIEEGGVGSNTAAATNNNNNSWVLWTSQPIDSGGSGIPKFWGASMVREDKEKGKVKEFEGRTFFDCEV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02228 294 CDD RING-H2_EL5-like 108 151 - -
Viun4g02228 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 157 IPR013083 -
Viun4g02228 294 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 166 - -
Viun4g02228 294 SMART ring_2 109 150 IPR001841 -
Viun4g02228 294 FunFam E3 ubiquitin-protein ligase ATL6 66 157 - -
Viun4g02228 294 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Viun4g02228 294 SUPERFAMILY RING/U-box 108 157 - -
Viun4g02228 294 Pfam Ring finger domain 108 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02228 Viun-Chr4 38007775 38008659 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02228 2 225 Rapid Response to Elicitors AT3G05200 30.249 1.14e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02228 K10664 - gmx:102665105 258.07