Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02227 ATGCTTCAATCAACTAAATTTCACACCTTTTTCATCACCCTCTTCACATTCATCTCCCTCTTCTTTCTCCATGCTTCCACTGCTCAAGCACAGTCTTCCATGGAGCCTGTGCCCACATACATCACCCACCACAGCTGGGAGCCCTCTGTTGCCATCACAGTTGGAGCCATCATCTTTGCTCTTCTTGTGATGGGAATCCTCTCCATCTACCTCCGCCGCTGTACCGAGTCACGGATCATCATCACGACGCAAACCACCACCACAGTTCCCTGCTCCTGCGCGCAGGGGATCAACAAAGAACTCTTGAATACCTTCCCCACTCTCTTCTACTCCAACATCAAGGACCTCAAAAAGGGTGAAGAAACGCTCGAATGTGCTGTGTGCTTGACCGATTTCTCAGACAAAGATGCCCTCAGACTCCTCCCCAAATGCAACCACGTGTTCCACCCTCACTGCATTGATTCCTGGCTCGCTTCCCACGTGACATGCCCTGTTTGCCGCGCGAATCTCAGCCAGGATGCGTGCCAGGTTGCCATAACAGTCCCCACCCTTCATGATGAGGAAGTTTCCGGAAGTGAAGAAACTGTGCCGGAACCAAATCAAAACACAAACACAAACCAGGTTTGTGTCGGAAGTCCTACTCATGACACAACCAAAACAGTGTGTGTAAATGAGGAACAATGTTCATCTCCTGATGTTGTTCCTGAGTTGGAAACAAGCTCAAATTCTGTGAGTGGTGATGGGGTGGTTGTTATTGCTGAGAGGAACCTTTCTAGATCAAATTCCACTGGGCATTCTCTTGTGGGTGTAGAGAGGTACACGTTGAGGTTACCGGAAGACGTGAGGAGGTACATTCTGGTGAATCATGGAAGGAGTGTTCAACGTTCAGCTAGTGCTAAGGGTACGTGTTGGAGTGATAGTGAAGAGAGTTATGGGGGGAAGAGGTTGGAGAAGAGGTGGGTGATTTGCACGCCGCCATTTGTGGCGAGCCATGGCTGA 999 0.4985 MLQSTKFHTFFITLFTFISLFFLHASTAQAQSSMEPVPTYITHHSWEPSVAITVGAIIFALLVMGILSIYLRRCTESRIIITTQTTTTVPCSCAQGINKELLNTFPTLFYSNIKDLKKGEETLECAVCLTDFSDKDALRLLPKCNHVFHPHCIDSWLASHVTCPVCRANLSQDACQVAITVPTLHDEEVSGSEETVPEPNQNTNTNQVCVGSPTHDTTKTVCVNEEQCSSPDVVPELETSSNSVSGDGVVVIAERNLSRSNSTGHSLVGVERYTLRLPEDVRRYILVNHGRSVQRSASAKGTCWSDSEESYGGKRLEKRWVICTPPFVASHG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02227 332 CDD RING-H2_EL5-like 124 167 - -
Viun4g02227 332 SMART ring_2 125 166 IPR001841 -
Viun4g02227 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 280 - -
Viun4g02227 332 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Viun4g02227 332 MobiDBLite consensus disorder prediction 194 210 - -
Viun4g02227 332 SUPERFAMILY RING/U-box 117 173 - -
Viun4g02227 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 174 IPR013083 -
Viun4g02227 332 MobiDBLite consensus disorder prediction 187 210 - -
Viun4g02227 332 Pfam Ring finger domain 124 167 IPR001841 -
Viun4g02227 332 FunFam E3 ubiquitin-protein ligase ATL6 85 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02227 Viun-Chr4 37991456 37993232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02227 8 286 Rapid Response to Elicitors AT3G05200 37.801 6.62e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02227 K10664 - gmx:100782532 448.743