Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02161 ATGTCAGAATCCAAGGAAGAAAATTCTGACCTTCTTCCCAAGTCAAAGCCACAGGAGGAACATGGGTTTTCCATGGATTTTGACATTGGCTTTGAAAGTCTATGGCCCTTGGATCATATATCTTTGATCTCCAATCCCATGTCTCCTTTTCTCTTATCCACTATCTCTGAACAACCTTTTTCTCCTGTCTGGGCTTTTTCTGATGTTGAAGATGAGAGACAAATCAGAATTGCAACTGCAGGTAACACAAAAGCAGTAACTGAAAATCCGGTTGAAAATTATGACACCAAGAAAACTGTGTCACCATCTCCTGTAACTGTGCCACCTTCAGAAAACCCAGATGGCTATTGTCTAATCAAGGAAAGAATGACACAAGCACTTCGCCACTTCAAAGAGTTGACTGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAACCGGTATGCACTCACAACTTCAGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTTTATCAGTATAGAACAGTGTCTCTGAGGTATATGTTTTCTGTGGATGGAGAGAATGATGAAATACTGGGACTTCCCGGTAGAGTTTTTCAGCAAAAAATTCCAGAATGGACTCCAAATGTTCAGTACTATTCTAGCAAAGAGTATCAGCGCCTAAACCATGCACAACATTACAATGTTCGTGGAACCTTGGCTCTACCTGTGTTTGAACCTGCAGGGCAGTCATGTGTAGCTGTACTGGAGTTGATAATGACTTCACCGAAGATTAACTATGCTCCTGAGGTTGACAAAATCTGCAAAGCCCTTGAGGCAGTTAATTTAAGGAGTTCAGAAATTTCGGAGCATCCATACAATCAGATTTGTAATGAAGATCGCCAGCACGCATTAGCCGAGATTTTGGAGATACTGACAGTTGTGTGTGAGACTCATAGTTTGCCTCTAGCACAAACATGGGTTCCATGTAAGCATCGGAGTGTCTTGGCACATGGTGGTGGTCATAAGAAAAGTTGCTCAAGTTTTGATGGTTGTTGCATGGGGCAAGTATGCATGTCTATAACTGAGGTAGCATTCTATGTCATAGATGCTCATACATGGGGTTTCCATGAGGCTTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTAGCTGGGAGGGCCTTTTTGTCTCACAACATGTGCTTCTGTGGGAACATTACTCAATTCTGCAAAACTGAATATCCATTAGTACATTATGCTCTCATGTTTGGTTTAAACAGCTCTTTTGCAGTATGCTTACAAAGCTCTCACACAGGAAATGATGAATATGTGCTAGAGTTTTTTCTTCCTCCAAGGGTCACAGATTTTAATGAACAAAAGAGCTTGTTGGGGTCAATATTGGCCACAATGAAGCCACATTTTCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTGAGCAGAATTGTTCCATTGAAATTATAGAAGCAAGAAAAGAAAGAGTTCATTTGTGGTTTGAATCAATTCCAATTACTCAATCTTCTAAGTCCTCACCTAGACATGCCTCACCAAATATGGGGGAGAGGCTGCCACTGGAGCCATCTGAGCAGCAAATAACAACAGACTTTGATGACCTAAATGATGGAAGGAATCTTGGTGACAATACAGGTGGCCACATTGATCAGAACACTTCCTTGGAACCCAGAAGCAAAAAGAAACCCTCAGAGAGAAAACGTGGAAAAGCTGAGAAATCTATTAGTCTTGATGTTTTGCAACATTACTTCACTGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACCACAATGAAACGCATCTGTAGGCAACATGGGATATCGCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCCTATCCAAGCTAAAGTGTGTTATTGAATCAGTCCATGGTGCTGAAGGTGCATTTGGTTTGAACTCTCTAAGTACTGGTTCACTTCCCATTGCTGCTGGTTCCTTTTCTGAGCCCTCCACTTCAAACAAGTTCAACCGCCAAACCTCATTGACCATTAGGCCATCAGAACCTAAGATCAATGGAAATGATTTTGATAATTCTAGAGCACCAGAATCAAACAGACAAACTGGGGTGGAAGGTCACTTCCTAAGTACAAGGACACAAAATCCTGAGAAAGTGATGAATGAAAAAGTTGTGGTGGCCATTCAGGAGATTGGCACTAAAGGCACAACCAGGTTTAGAACTGGCAGTGGCTCAAGTGAAGAAAGTGCAAATCCTTCTCCCCATGGTTCATGCCAAGGTAGTCCCCCAAATGAAATGTCCCCTCCAAAAGATATATTTGTAACAGGCATCAGTGAGCAATGTCTTGTTTTAAGGGGATCACTGGGGTCAACACTGCACTCAACTAGTACACCAAACCATGCAACTGCATACCCTATGCCTAACTTCGTGGAAACCACAGAACCTCAAGAACCATTTGGAGGACAACTACTTGAGGGTGTTGGTAGTTCTAAGGACTTGAGGAATCTGTGTCCTTCAGCCGATGCTGTTTTGGAGGATCAGGTTCCAGAACCTTGCAGGATGAATCCTCAATGTTCTGACTTGGGTCCTCTGCAACACATGGATACTGTCAATAATAATAACATGACACCTTTTGCAGTCAGGAAAGAGGTGAAGATTGTGACCATTAAGGCAACTTACAAAGAAGATATCATAAGGTTTAAGATCTCTTTGAACTGTGGCATTGTGGAATTGAAAGAAGAAATTGCCAAAAGGCTGAAACTAGAGGAGGGAACATTTGATATCAAGTATCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGACATCTCAAGATCATCAGGCAGCAACATAATCAGGCTTGTGGTGCATGATATTCTGCCCATTCTTGGAAGCTCTTGTGAGAGCTCAGGAGATTGGAAAGGTTGTATATAG 2970 0.4246 MSESKEENSDLLPKSKPQEEHGFSMDFDIGFESLWPLDHISLISNPMSPFLLSTISEQPFSPVWAFSDVEDERQIRIATAGNTKAVTENPVENYDTKKTVSPSPVTVPPSENPDGYCLIKERMTQALRHFKELTEQNVLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLYQYRTVSLRYMFSVDGENDEILGLPGRVFQQKIPEWTPNVQYYSSKEYQRLNHAQHYNVRGTLALPVFEPAGQSCVAVLELIMTSPKINYAPEVDKICKALEAVNLRSSEISEHPYNQICNEDRQHALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITEVAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNITQFCKTEYPLVHYALMFGLNSSFAVCLQSSHTGNDEYVLEFFLPPRVTDFNEQKSLLGSILATMKPHFQSLKIAAGVELEQNCSIEIIEARKERVHLWFESIPITQSSKSSPRHASPNMGERLPLEPSEQQITTDFDDLNDGRNLGDNTGGHIDQNTSLEPRSKKKPSERKRGKAEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSLSTGSLPIAAGSFSEPSTSNKFNRQTSLTIRPSEPKINGNDFDNSRAPESNRQTGVEGHFLSTRTQNPEKVMNEKVVVAIQEIGTKGTTRFRTGSGSSEESANPSPHGSCQGSPPNEMSPPKDIFVTGISEQCLVLRGSLGSTLHSTSTPNHATAYPMPNFVETTEPQEPFGGQLLEGVGSSKDLRNLCPSADAVLEDQVPEPCRMNPQCSDLGPLQHMDTVNNNNMTPFAVRKEVKIVTIKATYKEDIIRFKISLNCGIVELKEEIAKRLKLEEGTFDIKYLDDDHEWVLIACDADLQECMDISRSSGSNIIRLVVHDILPILGSSCESSGDWKGCI 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02161 989 Gene3D - 887 970 - -
Viun4g02161 989 FunFam RWP-RK domain-containing protein 886 970 - -
Viun4g02161 989 MobiDBLite consensus disorder prediction 1 20 - -
Viun4g02161 989 MobiDBLite consensus disorder prediction 738 767 - -
Viun4g02161 989 Pfam PB1 domain 890 970 IPR000270 GO:0005515
Viun4g02161 989 Pfam RWP-RK domain 579 626 IPR003035 -
Viun4g02161 989 MobiDBLite consensus disorder prediction 738 774 - -
Viun4g02161 989 ProSiteProfiles PB1 domain profile. 889 971 IPR000270 GO:0005515
Viun4g02161 989 MobiDBLite consensus disorder prediction 558 576 - -
Viun4g02161 989 MobiDBLite consensus disorder prediction 94 113 - -
Viun4g02161 989 ProSiteProfiles RWP-RK domain profile. 563 646 IPR003035 -
Viun4g02161 989 SUPERFAMILY CAD & PB1 domains 889 974 - -
Viun4g02161 989 CDD PB1_NLP 890 970 IPR034891 -
Viun4g02161 989 PANTHER PROTEIN NLP8 57 983 IPR045012 GO:0003700
Viun4g02161 989 MobiDBLite consensus disorder prediction 664 717 - -
Viun4g02161 989 SMART PB1_new 889 971 IPR000270 GO:0005515
Viun4g02161 989 MobiDBLite consensus disorder prediction 507 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02161 Viun-Chr4 37076447 37081640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02161 253 984 NLP Transcription Factor Family AT4G24020 51.887 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Viun4g02161 PB1 5.5e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02161 - - gmx:100780901 1702.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02161 4 37076447 37081640 Viun7g03245 7 34653824 34657962 PCT