Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02148 ATGGGCGGAGAATCTTCCCTTTATTTTCCCACGGGCGATGACAACTCTGATGATTTGCTTCGATTACTTGAGGCTTTAGATTCACAAGGTGTTAACAATTCTTTTTCAAGTTTGAATGTTCATATCTTTGGAGGTTGGCCTTTGCTCTCTCCTATGAAGCTTCAGTTGGAGCATTGTGACAAATGTTCTCAAGTGTTTTGCTCCACCCTTAACTATAGAAGACATATTCGTGTACATCATCGGCTGCAAAAGCTTGACAAGGTTCAGGATTTTACAAAAAGCAGGGATCTTGTAGGAGCATATTGGGATAAGCTCTCTGCAGAAGAGGCAAAGGAAGTTGTATCATTGGAAAATGTTCTGCTGGAGGAAGTTCCGGCTGCTTCAATTTTAAAATCATTGACAACTCTTATTCAAAACCAAAGATTGTATTCATTTCCTCCGCATTATATGATGTCTGGCGCTGTCCTTTTGGGTATTGCTCAATCTAGACCTTCCAGCTTTCCCATATCTTCCCAATTGTTGTTCGGTTTTCTTGATGATGCCAGTGAAAAAACATGGTTATGCGGAACAACAGAGTCAGTGAAAAAATATGTATTTGATGGAGATGCGGGAAAAATTTGTCTTGAACTGAAAAACCTAGTTGCTTGCACAGGTTTCTTGATAGAACAAAAATTGGTGAAGGCGTGGCTTACTGACCAGGATGCCGAAGCACTTAGGTGTCAGGAGCAATTGGTGGAGGAGGAAAAAGCTGCTCAAAAAAGACAAGCTGAGATTTTGGGGAAGAAACGCCAGAAGAAGCTCAGACAAAAAGAACAGAAAGCTAGGGAACGAAGAGAGAAAGCTGAGGCAGAAATTAAAGGCTATATTGACCGTGGTGTAAAGGCTTTATCACTGACTGAAGCATCTTCAGATACGCACAATCTCGAAGCTCATAATCCAAATGCATTTTCAGATAACGTAGCTTCACCTGTACCTCCCCAATATATTGACACCAATGAGGAAATAAAGGTGGATACTCCTTCAGAGTATGATACCATCCCTGATCAGAATCTTGAGAGCAAATCGGCTGAACCTAATGTCTTGCATACAGACCATATTTCTCCTCTGCCAAAAGTTGAAGTCAATCAGAAAGCTGAAGCCAAGCATGATAACAAGGTATTGAGTCCAAAGTCTGAAGAAAAAACTGACAAGGGAGTTTTAAAAACCACACAAGAAAAACAAGCAGACCAACTTAAGAGCCAAGAAATTTTGATAGGATCTATACCTGTTAATATTGACACTTGCAAACAATCAGAGGGTAATACGGTGGCTTCTCAAAAGGATTCTATGGTTGAGAATGTGGGTAAGCCAATGGAAACTGAAGATGAAGTTCCAATTCAAAGTGACGAGACAGAAGGTGATGCAGTTCATCGAAATGTTCCAAGTTTAAGCACGGGTAGAACACAGGGTAGAATGGACTCTAGAAGCTTGCAGTCCTTCTTCCAGGATGCAAGAGCTTTCTTAGACAGAAGATGGGGTGAAACTATTTCATCAGAACATGTGATATTGAATATTAGCTCTGACTCAGAAGAATCTTCTTCGTCCCAAGAGACGCAGGATTGA 1602 0.4082 MGGESSLYFPTGDDNSDDLLRLLEALDSQGVNNSFSSLNVHIFGGWPLLSPMKLQLEHCDKCSQVFCSTLNYRRHIRVHHRLQKLDKVQDFTKSRDLVGAYWDKLSAEEAKEVVSLENVLLEEVPAASILKSLTTLIQNQRLYSFPPHYMMSGAVLLGIAQSRPSSFPISSQLLFGFLDDASEKTWLCGTTESVKKYVFDGDAGKICLELKNLVACTGFLIEQKLVKAWLTDQDAEALRCQEQLVEEEKAAQKRQAEILGKKRQKKLRQKEQKARERREKAEAEIKGYIDRGVKALSLTEASSDTHNLEAHNPNAFSDNVASPVPPQYIDTNEEIKVDTPSEYDTIPDQNLESKSAEPNVLHTDHISPLPKVEVNQKAEAKHDNKVLSPKSEEKTDKGVLKTTQEKQADQLKSQEILIGSIPVNIDTCKQSEGNTVASQKDSMVENVGKPMETEDEVPIQSDETEGDAVHRNVPSLSTGRTQGRMDSRSLQSFFQDARAFLDRRWGETISSEHVILNISSDSEESSSSQETQD 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02148 533 MobiDBLite consensus disorder prediction 371 406 - -
Viun4g02148 533 MobiDBLite consensus disorder prediction 260 279 - -
Viun4g02148 533 MobiDBLite consensus disorder prediction 375 403 - -
Viun4g02148 533 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Viun4g02148 533 Coils Coil 264 291 - -
Viun4g02148 533 ProSitePatterns Zinc finger C2H2 type domain signature. 59 80 IPR013087 -
Viun4g02148 533 MobiDBLite consensus disorder prediction 452 487 - -
Viun4g02148 533 Coils Coil 235 255 - -
Viun4g02148 533 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02148 Viun-Chr4 36969271 36972940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02148 1 528 C2H2 Transcription Factor Family AT4G25610 36.814 1.12e-93 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun4g02148 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02148 - - vun:114180859 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02148 4 36969271 36972940 Viun4g02148 4 36969271 36972940 ECH
Viun4g02148 4 36969271 36972940 Viun7g03237 7 34614812 34621108 PCT