Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02111 ATGTCATCGCCGGGGTTCACTGGGGGAGGTGGGGCATCGGAGTATTTTGCCGGAGCGGGTGGTTTCACCGGTAGATCCATTCCGGCAGCCACCATGAACAACCCAAACGGCGTCGCGACTGCCACCGCAAACCTCCACCCTCTCTACCGAACCCAGCAACAGAACCTCCCTGCAATGTTTCTAGATCCTGCCTCGCAGATCGCTCAACGCCAGACACCAACCCTTATCGGTAAACGCACCCTCACCGAATTCCAAACCTATAACCAAACCTATAACCAACCCAACAACAACCCCAACCACGTCCTCTCTAACCTCTTGCTTCGTTCAGTTAAGCCTCGAACCAGTTTCTCTCAGAGTTCCATGGAGAACTTTCCCGAATTGCATAACCAAAACCCTTCCCTTTACCAACAGCAACGTTTTGGTGTTCCTTTACTCCATCAGCTCCGTCCCCAGCCCATTAACCTTCCTAGCAATGGGTCTGGGCCCATGCCAAGCCCAAATTTCGGCTATCGGAACTCCAATTTGGGCATGCCACAGAACCGGGTTCGTCTTTCTGCTCCTCTTCCGGTTCCGGTTCAGGTGGTTGAGCCGGAGAAGAAGATCATGGATCACCGGCTTCTCGAATTGGAGAAACAACTTCTGGAAGATAACGATGAAGATGAAGGAGAAGCCGATGCTGCGTCCGTGATAACCACCAGCGAGTGGTCTGAAACCTATCAGAATTTAATCAGTCCCGGTCCGGTTCAGAAACTGGTCTCAACATCACCGACTTCATCAACCACTTCGTCTACGTCATCTTCTTCCTCCATCGCTTCACCTGCTTCGGGATGCTCCAGGCAGACGCTCATGGAAGCCGCATCTGCAATTGTGGAAGGAAAATATGATATGGCTACGGAGATCCTGAACCGGTTGAACGGTCCGAACCGGACTGACAAATTAACCGATTGCATGGTGTTGGCGTTGAAGTCCAGGATGAATCCGGTGGAATATCCGCCTCCAGTGACGGAGCTTTTCGGCTATGAACACGCCGAGTCGACTCAGTTGATTTTGGAAAACTCCATGTGTTTTAAGGTAGGGTTAATGGCTGCGAATCTCGCGATTTTGGAAGCTGCATTTGAGGAGAAAACGGAAAACAAGTTCTGTGTGGTGGATTTTGAGATTGGACAGGGAAAGCAGTATCCGCACCTTCTCAACGCGCTCTCCACACGTGGACAGAACGTCACACTCAAACTAGTGGCGGTGGCCGAGAGCGGCGGCGAAGACAGAGTGCGTGCAGTCGGAGACATGCTGAGTCGTCTAGCAGAAAGGAAGAGGATCGGGTTCGAGTTCAGACTTGTACCAACTCAGAAACTCACCGAGTTGACCCGCGAGTCGCTGGGATGCAATGAGGACGAAGTTCTCATGGTGAATTTTGCGTTCAAGCTTCACAAAATCCCTGATGAGAGTGTCTCCACCGAAAACCCTCGCGACGAGCTTCTCCGGCGCGTGAAGGGACTCGCCCCGCGCGTGGTAACAATAGTGGAACAGGAGATGAATGCAAACACAGCACCTTTTTTGGCTCGCGTGGCAGAAACGCTGTCGTTTTACGGTGCCTTATTGGAGTCCATGGAAGCCATGACCTCTAGGGATAACAATAACAGCACCAACAACTCTGACCGAGTCAGACTCGAGGAAGGACTCACTCGCAAGCTACACAACTCAGTAGCATGCGAAGGCAGAGATCGTGTAGAGCGTTGTGAAGTGTTCGGAAAATGGCGAGCGCGTATGAGCATGGCAGGGTTTGAGTTAAAGCCACTGAATCAAAACATAGTCGAGTCAATAAAATCACGACTCACCGCCACTCCCAACAACAACAACAACCGAGTCAACTCGGGACTGATAGTGAAGGAAGAGAACGGTGGGATTTGCTCTGGCTGGATGGGAAGAACACTGACAGTAACATCTGCTTGGCGTTAA 1956 0.5153 MSSPGFTGGGGASEYFAGAGGFTGRSIPAATMNNPNGVATATANLHPLYRTQQQNLPAMFLDPASQIAQRQTPTLIGKRTLTEFQTYNQTYNQPNNNPNHVLSNLLLRSVKPRTSFSQSSMENFPELHNQNPSLYQQQRFGVPLLHQLRPQPINLPSNGSGPMPSPNFGYRNSNLGMPQNRVRLSAPLPVPVQVVEPEKKIMDHRLLELEKQLLEDNDEDEGEADAASVITTSEWSETYQNLISPGPVQKLVSTSPTSSTTSSTSSSSSIASPASGCSRQTLMEAASAIVEGKYDMATEILNRLNGPNRTDKLTDCMVLALKSRMNPVEYPPPVTELFGYEHAESTQLILENSMCFKVGLMAANLAILEAAFEEKTENKFCVVDFEIGQGKQYPHLLNALSTRGQNVTLKLVAVAESGGEDRVRAVGDMLSRLAERKRIGFEFRLVPTQKLTELTRESLGCNEDEVLMVNFAFKLHKIPDESVSTENPRDELLRRVKGLAPRVVTIVEQEMNANTAPFLARVAETLSFYGALLESMEAMTSRDNNNSTNNSDRVRLEEGLTRKLHNSVACEGRDRVERCEVFGKWRARMSMAGFELKPLNQNIVESIKSRLTATPNNNNNRVNSGLIVKEENGGICSGWMGRTLTVTSAWR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02111 651 Pfam GRAS domain family 279 651 IPR005202 -
Viun4g02111 651 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 251 620 IPR005202 -
Viun4g02111 651 MobiDBLite consensus disorder prediction 246 276 - -
Viun4g02111 651 ProSiteProfiles GRAS family profile. 269 651 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02111 Viun-Chr4 36610853 36613253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02111 49 651 GRAS Transcription Factor Family AT5G52510 47.410 3.61e-146 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun4g02111 GRAS 3e-82 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02111 - - vun:114181888 1182.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02111 4 36610853 36613253 Viun4g02111 4 36610853 36613253 ECH
Viun4g02111 4 36610853 36613253 Viun7g03212 7 34515341 34517495 PCT