Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g02109 ATGCAGGATGCCAGTATTGATGATAAGAGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTTTGCTCAAAATGTTTTCTCCTTATGGAAAGATAATTTCTGAGGACTTCTTATGGCACACACGTGGCCCGAAACGTGGGGAGCCACGTGGCTTTGCTTTCATCCAGTATAGCACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCACGGGAGGTTCGCCTGCGGCCGGCCGCTGGTTGTTCGTCTTGCCGGTGAGAAGTGTTTGCTGGAAACAGCTGATAAGTCTACAAAGGCAGCAAGTGAAGGGCACAAGATGCTTCTCATTGGTGGTGGTGGTGGTGGTGGTGCCATGGGACAGACAAGTCGCACTGCAAAGATAGCTGCTATAAAAAATAAACTGAAATCCTTAGAGGAGGAGAGTTCTAGGACCAAGAAGCAGAAGCAAAGTGAGAATATTTGTTGA 486 0.4588 MQDASIDDKSESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCLLETADKSTKAASEGHKMLLIGGGGGGGAMGQTSRTAKIAAIKNKLKSLEEESSRTKKQKQSENIC 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g02109 161 SMART rrm1_1 13 89 IPR000504 GO:0003723
Viun4g02109 161 Gene3D - 2 136 IPR012677 -
Viun4g02109 161 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 93 IPR000504 GO:0003723
Viun4g02109 161 CDD RRM_RBM18 13 91 IPR039157 -
Viun4g02109 161 Coils Coil 134 154 - -
Viun4g02109 161 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 86 IPR000504 GO:0003723
Viun4g02109 161 SUPERFAMILY RNA-binding domain, RBD 6 95 IPR035979 GO:0003676
Viun4g02109 161 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g02109 Viun-Chr4 36588256 36589081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g02109 12 94 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 3.84e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g02109 K24527 - gmx:100806572 270.781